POPTR_0005s12050 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0005s12050 T278280_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.741 0.849
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.741 0.849
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.669 0.753
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.669 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12050.1 Myb 173 219
POPTR_0005s12050.1 Myb 225 270

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.904
30147.m013937 Ricinus communis 30147.m013937 I 0.802
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.796
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.796
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.775
29917.m001977 Ricinus communis 29917.m001977 I 0.772
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.770
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.769
Cla019490 Citrullus lanatus Cla019490 I 0.767
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.766
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.766
TCM_012087 Theobroma cacao TCM_012087 I 0.761
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.753
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.749
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.748
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.748
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.746
MYB98 Arabidopsis thaliana AT4G18770 D 0.741
Bo1g019910 Brassica oleracea Bo1g019910 I 0.741
Bra013346 Brassica rapa Bra013346 I 0.741
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.741
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.741
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.741
Bo3g157300 Brassica oleracea Bo3g157300 I 0.738
Bra020992 Brassica rapa Bra020992 I 0.738
Ca_17087 Cicer arietinum Ca_17087 I 0.737
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.736
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.736
Pm024743 Prunus mume Pm024743 I 0.736
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.736
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.736
MDP0000215359 Malus domestica MDP0000215359 I 0.736
Ca_17294 Cicer arietinum Ca_17294 I 0.735
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.733
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.732
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.731
Si039046m.g Setaria italica Si039046m.g I 0.731
Ca_07482 Cicer arietinum Ca_07482 I 0.731
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.729
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.729
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.727
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.726
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.725
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.724
Cla010586 Citrullus lanatus Cla010586 I 0.723
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.720
OBART06G04170 Oryza barthii OBART06G04170 I 0.720
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.720
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.720
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.720
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.720
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.720
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.720
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.720
OS06G0162700 Oryza sativa OS06G0162700 I 0.720
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.716
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.712
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.712
F775_22212 Aegilops tauschii F775_22212 I 0.711
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.711
OB06G13860 Oryza brachyantha OB06G13860 I 0.711
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.711
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.711
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.711
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.711
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.709
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.708
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.705
Bra025299 Brassica rapa Bra025299 I 0.701
Bo7g106240 Brassica oleracea Bo7g106240 I 0.699
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.699
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.698
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.698
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.697
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.696
Pm015681 Prunus mume Pm015681 I 0.696
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.695
mgf023372m Mimulus guttatus mgf023372m I 0.695
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.695
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.694
Bo2g028290 Brassica oleracea Bo2g028290 I 0.692
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.689
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.688
mgf024290m Mimulus guttatus mgf024290m I 0.687
Bra012579 Brassica rapa Bra012579 I 0.686
GSMUA_Achr3G09050_001 Musa acuminata GSMUA_Achr3G09050_001 N 0.684
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.682
Bra020346 Brassica rapa Bra020346 I 0.679
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.678
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.678
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N 0.675
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.673
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.673
mg025334m Mimulus guttatus mg025334m I 0.673
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.673
Bo3g018490 Brassica oleracea Bo3g018490 I 0.671
Bra006744 Brassica rapa Bra006744 I 0.671
Ca_19427 Cicer arietinum Ca_19427 I 0.670
MYB118 Arabidopsis thaliana AT3G27785 D 0.669
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.669
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.669
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.669
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.669
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.669
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.668
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.668
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.667
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.666
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.665
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.665
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.665
MDP0000199939 Malus domestica MDP0000199939 I 0.664
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.664
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.664