Thhalv10016057m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10016057m.g T290068_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.661 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.661 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016057m Myb 116 162
Thhalv10016057m Myb 168 213

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB64 Arabidopsis thaliana AT5G11050 N 0.869
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.860
Bo2g028290 Brassica oleracea Bo2g028290 I 0.854
Bra020346 Brassica rapa Bra020346 I 0.849
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.845
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.845
Bo3g018490 Brassica oleracea Bo3g018490 I 0.841
Bra006744 Brassica rapa Bra006744 I 0.841
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.834
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.834
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.828
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.828
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.828
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.828
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.812
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.769
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.768
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.746
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.746
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.739
TCM_041651 Theobroma cacao TCM_041651 N 0.730
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.729
Cla008304 Citrullus lanatus Cla008304 N 0.725
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.722
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.717
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.716
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.716
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.708
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.708
29681.m001315 Ricinus communis 29681.m001315 N 0.705
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.705
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.701
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.700
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.695
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.693
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.693
Cla019490 Citrullus lanatus Cla019490 I 0.692
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.691
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.690
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.689
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.687
Pm000541 Prunus mume Pm000541 I 0.687
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.687
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.686
F775_22212 Aegilops tauschii F775_22212 I 0.686
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.686
OB06G13860 Oryza brachyantha OB06G13860 I 0.686
OBART06G04170 Oryza barthii OBART06G04170 I 0.686
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.686
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.686
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.686
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.686
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.686
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.686
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.686
OS06G0162700 Oryza sativa OS06G0162700 I 0.686
TCM_012087 Theobroma cacao TCM_012087 I 0.686
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.686
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.686
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.686
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.686
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.686
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.685
MDP0000319656 Malus domestica MDP0000319656 I 0.684
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.684
30147.m013937 Ricinus communis 30147.m013937 I 0.683
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.683
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.682
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.679
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.675
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.674
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.673
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.673
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.672
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.672
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.671
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.670
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.668
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.667
Si039046m.g Setaria italica Si039046m.g I 0.666
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.664
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.664
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.662
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.662
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.662
Pm024743 Prunus mume Pm024743 I 0.662
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.662
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.662
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.662
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.662
MDP0000215359 Malus domestica MDP0000215359 I 0.662
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.662
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N 0.661
MYB98 Arabidopsis thaliana AT4G18770 D 0.661
Bo1g019910 Brassica oleracea Bo1g019910 I 0.661
Bra013346 Brassica rapa Bra013346 I 0.661
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.661
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.661
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.661
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.661
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.661