POPTR_0001s25710 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s25710 T278198_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s25710.1 Myb 137 183
POPTR_0001s25710.1 Myb 198 243

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N 0.885
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.885
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.862
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.856
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.852
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.848
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.847
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.847
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.835
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N 0.827
TCM_041651 Theobroma cacao TCM_041651 N 0.826
Cla008304 Citrullus lanatus Cla008304 N 0.825
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.822
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.820
Pm000541 Prunus mume Pm000541 I 0.820
MDP0000319656 Malus domestica MDP0000319656 I 0.817
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.816
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.812
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.804
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.790
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.790
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.783
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.776
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.771
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.758
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.746
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.746
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.746
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.738
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.738
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.736
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.724
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.724
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.724
Pm024743 Prunus mume Pm024743 I 0.724
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.724
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.724
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.723
Bo3g018490 Brassica oleracea Bo3g018490 I 0.721
Bra006744 Brassica rapa Bra006744 I 0.721
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.721
MYB64 Arabidopsis thaliana AT5G11050 N 0.717
Bo2g028290 Brassica oleracea Bo2g028290 I 0.717
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.717
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.717
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.716
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.715
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.714
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.713
Bra020346 Brassica rapa Bra020346 I 0.712
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.709
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.708
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.708
Cla019490 Citrullus lanatus Cla019490 I 0.706
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.703
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.702
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.701
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.700
TCM_012087 Theobroma cacao TCM_012087 I 0.700
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.700
MDP0000215359 Malus domestica MDP0000215359 I 0.700
Eucgr.J01929 Eucalyptus grandis Eucgr.J01929 N 0.698
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.691
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.691
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.691
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.691
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.690
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.690
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.689
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.686
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.682
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.679
mgf024290m Mimulus guttatus mgf024290m I 0.677
MDP0000199939 Malus domestica MDP0000199939 I 0.676
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.676
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.676
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.676
Ca_17294 Cicer arietinum Ca_17294 I 0.671
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.667
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.667
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.667
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.665
mg025334m Mimulus guttatus mg025334m I 0.665