28226.m000839 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 28226.m000839 T283725_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRMZM2G005066
M11056_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$C1_Q2 		0.734 0.731
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.684 0.688
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.678 0.720
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.667 0.667
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.667 0.667
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.665 0.720
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.664 0.677
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.664 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
28226.m000839 Myb 14 61
28226.m000839 Myb 67 112

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA009295 Oryza indica BGIOSGA009295 N
F775_10178 Aegilops tauschii F775_10178 N
MLOC_51817 Hordeum vulgare MLOC_51817 N
OBART02G37310 Oryza barthii OBART02G37310 N
OGLUM02G38450 Oryza glumaepatula OGLUM02G38450 N
OLONG_013731 Oryza longistaminata OLONG_013731 N
OMERI02G35090 Oryza meridionalis OMERI02G35090 N
ONIVA02G40070 Oryza nivara ONIVA02G40070 N
OPUNC02G34470 Oryza punctata OPUNC02G34470 N
ORGLA02G0325300 Oryza glaberrima ORGLA02G0325300 N
ORUFI02G38810 Oryza rufipogon ORUFI02G38810 N
OS02G0817000 Oryza sativa OS02G0817000 N
Traes_6BL_70715AAF9 Triticum aestivum Traes_6BL_70715AAF9 N
Traes_6DL_917D35DED Triticum aestivum Traes_6DL_917D35DED N
TRIUR3_25071 Triticum urartu TRIUR3_25071 N
Pavir.Ab03236 Panicum virgatum Pavir.Ab03236 N