CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

29912.m005376 *(Ricinus communis)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	29912.m005376	T283828_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TRB2 M02314_2.00	Arabidopsis thaliana	WRMCCTAR	YTAGGKYW	PBM Weirauch et al.(2014) pTH7094	0.761	0.761
TRB2 M01083_2.00	Arabidopsis thaliana	HRMCCTAR	YTAGGKYD	PBM Sullivan et al.(2014) pTH7260	0.761	0.761
TRB2 M07157_2.00	Arabidopsis thaliana	HHHHHNWWRCCCTAAWHHN	NDDWTTAGGGYWWNDDDDD	Dap-seq OMalley et al.(2016) TBP3_col_a	0.761	0.761
TRB2 M07158_2.00	Arabidopsis thaliana	HVDHHHNWARCCCTAAHYH	DRDTTAGGGYTWNDDDHBD	Dap-seq OMalley et al.(2016) TBP3_colamp_a	0.761	0.761
OS01G0708000 M02326_2.00	Oryza sativa	WRMCCTAVNN	NNBTAGGKYW	PBM Weirauch et al.(2014) pTH8716	0.745	0.848
AT1G72740 M07033_2.00	Arabidopsis thaliana	HMNAAACCCTAAWYY	RRWTTAGGGTTTNKD	Dap-seq OMalley et al.(2016) AT1G72740_col_a	0.735	0.804
AT1G72740 M07034_2.00	Arabidopsis thaliana	HNWAACCCTAAHYHNNNHNNN	NNNDNNNDRDTTAGGGTTWND	Dap-seq OMalley et al.(2016) AT1G72740_colamp_a	0.735	0.804
TRB1 M01070_2.00	Arabidopsis thaliana	WRMCCTAR	YTAGGKYW	PBM Sullivan et al.(2014) pTH7117	0.686	0.761
PK06103.1 M02348_2.00	Cannabis sativa	TGCCCTAG	CTAGGGCA	PBM Weirauch et al.(2014) pTH9649	0.685	0.761
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
29912.m005376	Myb	5	56	KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEFNPFLFSRSNIDLKDKWRNM

Links
Other Myb/SANT family TFs
Other *Ricinus communis* TFs

211 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANCCAN_02634	Ancylostoma caninum	ANCCAN_02634	I
ANCCEY_06558	Ancylostoma ceylanicum	ANCCEY_06558	I
DICVIV_05621	Dictyocaulus viviparus	DICVIV_05621	I
HCOI01299300	Haemonchus contortus	HCOI01299300	I
HCOI02041100	Haemonchus contortus	HCOI02041100	I
NBR_0002173001	Nippostrongylus brasiliensis	NBR_0002173001	I
NECAME_14255	Necator americanus	NECAME_14255	I
TELCIR_06021	Teladorsagia circumcincta	TELCIR_06021	I
TELCIR_07862	Teladorsagia circumcincta	TELCIR_07862	I
ALUE_0001971901	Ascaris lumbricoides	ALUE_0001971901	N
ASU_09731	Ascaris suum	ASU_09731	N
BXY_0632600	Bursaphelenchus xylophilus	BXY_0632600	N
RSKR_0000612400	Rhabditophanes kr3021	RSKR_0000612400	N