cassava47374.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava47374.m1 T284319_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.805 0.903
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.801 0.882
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.801 0.882
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.801 0.871
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.784 0.882
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.784 0.882
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.784 0.882
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.762 0.882
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.762 0.882
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.762 0.882
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.762 0.882
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.762 0.882
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.701 0.753
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.669 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava47374.m1 Myb 18 64
cassava47374.m1 Myb 70 115

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

330 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NTL9 Arabidopsis thaliana AT4G35580 D
Lus10008285.g Linum usitatissimum Lus10008285.g I
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I
Carubv10007613m.g Capsella rubella Carubv10007613m.g I
Carubv10008529m.g Capsella rubella Carubv10008529m.g I
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I
Lus10010148.g Linum usitatissimum Lus10010148.g I
Lus10033251.g Linum usitatissimum Lus10033251.g I
MDP0000266908 Malus domestica MDP0000266908 I
MDP0000658409 Malus domestica MDP0000658409 I
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I
PK02019.1 Cannabis sativa PK02019.1 I
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I
NAC014 Arabidopsis thaliana AT1G33060 I
Bo5g086780 Brassica oleracea Bo5g086780 I
Bra010193 Brassica rapa Bra010193 I
ANAC014 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002639 I
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I
TCM_015584 Theobroma cacao TCM_015584 I
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I
Pm029581 Prunus mume Pm029581 I
30068.m002619 Ricinus communis 30068.m002619 I
mgf022344m Mimulus guttatus mgf022344m I
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I
gene12442-v1.0-hybrid Fragaria vesca gene12442-v1.0-hybrid N
Cla002432 Citrullus lanatus Cla002432 N
Cucsa.273280 Cucumis sativus Cucsa.273280 N
SapurV1A.0666s0060 Salix purpurea SapurV1A.0666s0060 N