Bostr.2618s0066 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.2618s0066 T285801_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.909 1.000
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.909 1.000
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.909 1.000
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.786 0.826
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.777 0.848
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.767 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.767 0.804
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.745 0.696
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.745 0.696
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.745 0.696
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.738 0.804
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.738 0.804
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.704 0.696
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.703 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.703 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.703 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.703 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.703 0.739
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.670 0.674
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.670 0.674
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.670 0.674
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.670 0.652
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.670 0.652
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.670 0.652
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.661 0.630
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.661 0.630
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.661 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2618s0066.1.p Myb 55 100

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

476 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phyra80938 Phytophthora ramorum Phyra80938 D
Physo132946 Phytophthora sojae Physo132946 I
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I
maker-pve_contig_1017-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_1017-fgenesh-gene-0.2 I
maker-pve_contig_734-snap-gene-0.9 Pythium vexans maker-pve_contig_734-snap-gene-0.9 I
Phyra87784 Phytophthora ramorum Phyra87784 I
Phyra95260 Phytophthora ramorum Phyra95260 I
Physo132941 Phytophthora sojae Physo132941 I
Physo132943 Phytophthora sojae Physo132943 I
Physo132945 Phytophthora sojae Physo132945 I
maker-pve_contig_13-snap-gene-0.46 Pythium vexans maker-pve_contig_13-snap-gene-0.46 I
PITG_14400 Phytophthora infestans PITG_14400 I
PITG_18789 Phytophthora infestans PITG_18789 I
PYU1_G002833 Pythium ultimum PYU1_G002833 I
PYU1_G002835 Pythium ultimum PYU1_G002835 I
PYU1_G002849 Pythium ultimum PYU1_G002849 I
estExt_fgenesh1_kg.C_2050026 Phytophthora capsici estExt_fgenesh1_kg.C_2050026 I
estExt_fgenesh1_kg.C_3051400005 Phytophthora capsici estExt_fgenesh1_kg.C_3051400005 I
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I
maker-pir_contig_548-snap-gene-0.6 Pythium irregulare maker-pir_contig_548-snap-gene-0.6 I
fgenesh_scip_prom.28083.5526 Phytophthora lateralis fgenesh_scip_prom.28083.5526 I
fgenesh_scip_prom.28083.1909 Phytophthora lateralis fgenesh_scip_prom.28083.1909 I
F443_20703 Phytophthora parasitica F443_20703 I
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I
F443_20702 Phytophthora parasitica F443_20702 I
maker-pir_contig_435-fgenesh-gene-0.6 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.6 I
maker-pir_contig_435-fgenesh-gene-0.7 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.7 I
F443_20671 Phytophthora parasitica F443_20671 I
F443_19686 Phytophthora parasitica F443_19686 I
F443_08983 Phytophthora parasitica F443_08983 I
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I
maker-piw_contig_50-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_50-fgenesh-gene-0.1 I
maker-pir_contig_548-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.4 I
PYU1_G002832 Pythium ultimum PYU1_G002832 N
F443_03239 Phytophthora parasitica F443_03239 N
PYU1_G002831 Pythium ultimum PYU1_G002831 N
PYU1_G002826 Pythium ultimum PYU1_G002826 N
fgenesh_scip_prom.46568.9767 Phytophthora kernoviae fgenesh_scip_prom.46568.9767 N
Physo132965 Phytophthora sojae Physo132965 N
fgenesh_scip_prom.46568.9768 Phytophthora kernoviae fgenesh_scip_prom.46568.9768 N
maker-par_contig_8416-snap-gene-0.0 Pythium arrhenomanes maker-par_contig_8416-snap-gene-0.0 N
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N
Phyra80925 Phytophthora ramorum Phyra80925 N
Phyra80922 Phytophthora ramorum Phyra80922 N
ALNC14_029500 Albugo laibachii ALNC14_029500 N