Cagra.0090s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0090s0025 T285935_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.902 0.979
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.785 0.883
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.736 0.819
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.736 0.819
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.661 0.809
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.661 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0090s0025.1.p Myb 140 187

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Dbp Mus musculus ENSMUSG00000059824 D
DBP Homo sapiens ENSG00000105516 D
ENSTNIG00000008098 Tetraodon nigroviridis ENSTNIG00000008098 I
ENSORLG00000011412 Oryzias latipes ENSORLG00000011412 I
ENSPANG00000015471 Papio anubis ENSPANG00000015471 I
DBP Procavia capensis ENSPCAG00000011426 I
ENSPFOG00000007430 Poecilia formosa ENSPFOG00000007430 I
ENSPFOG00000010189 Poecilia formosa ENSPFOG00000010189 I
ENSPSIG00000015238 Pelodiscus sinensis ENSPSIG00000015238 I
DBP Pan troglodytes ENSPTRG00000011247 I
Dbp Rattus norvegicus ENSRNOG00000021027 I
DBP Sus scrofa ENSSSCG00000003148 I
ENSSSCG00000024294 Sus scrofa ENSSSCG00000024294 I
ENSSTOG00000024246 Ictidomys tridecemlineatus ENSSTOG00000024246 I
ENSTNIG00000004400 Tetraodon nigroviridis ENSTNIG00000004400 I
ENSONIG00000007041 Oreochromis niloticus ENSONIG00000007041 I
ENSTRUG00000007098 Takifugu rubripes ENSTRUG00000007098 I
DBP Tursiops truncatus ENSTTRG00000008191 I
ENSXMAG00000012054 Xiphophorus maculatus ENSXMAG00000012054 I
ENSXMAG00000014158 Xiphophorus maculatus ENSXMAG00000014158 I
Alligator_sinensis_CCG018001.1 Alligator sinensis Alligator_sinensis_CCG018001.1 I
ENSBTAP00000008883-D1 Bos grunniens ENSBTAP00000008883-D1 I
ENSP00000222122 Macaca fascicularis ENSP00000222122 I
Myotis_brandtii_DBP_10017602 Myotis brandtii Myotis_brandtii_DBP_10017602 I
Ogr12886 Ophisaurus gracilis Ogr12886 I
Pvit_12136 Pogona vitticeps Pvit_12136 I
dbp Xenopus tropicalis XB-GENE-5995286 I
ENSTRUG00000003893 Takifugu rubripes ENSTRUG00000003893 I
ENSGACG00000010676 Gasterosteus aculeatus ENSGACG00000010676 I
ENSAMEG00000014843 Ailuropoda melanoleuca ENSAMEG00000014843 I
ENSAMXG00000009417 Astyanax mexicanus ENSAMXG00000009417 I
ENSAMXG00000016053 Astyanax mexicanus ENSAMXG00000016053 I
DBP Bos taurus ENSBTAG00000006754 I
DBP Canis familiaris ENSCAFG00000003928 I
DBP Callithrix jacchus ENSCJAG00000000360 I
DBP Cavia porcellus ENSCPOG00000019616 I
ENSCSAG00000002831 Chlorocebus sabaeus ENSCSAG00000002831 I
dbpa Danio rerio ENSDARG00000063014 I
DBP Dasypus novemcinctus ENSDNOG00000016868 I
DBP Equus caballus ENSECAG00000014275 I
ENSFCAG00000030886 Felis catus ENSFCAG00000030886 I
ENSONIG00000012778 Oreochromis niloticus ENSONIG00000012778 I
DBP Gorilla gorilla ENSGGOG00000001444 I
ENSLACG00000006062 Latimeria chalumnae ENSLACG00000006062 I
DBP Loxodonta africana ENSLAFG00000013079 I
ENSMEUG00000000663 Macropus eugenii ENSMEUG00000000663 I
ENSMICG00000016323 Microcebus murinus ENSMICG00000016323 I
DBP Myotis lucifugus ENSMLUG00000025433 I
DBP Macaca mulatta ENSMMUG00000022160 I
ENSMPUG00000003854 Mustela putorius furo ENSMPUG00000003854 I
ENSNLEG00000004551 Nomascus leucogenys ENSNLEG00000004551 I
ENSOARG00000011967 Ovis aries ENSOARG00000011967 I
DBP Otolemur garnettii ENSOGAG00000034399 I
DBP Anolis carolinensis ENSACAG00000015667 I