Cagra.5588s0009 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.5588s0009 T286166_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.828 0.894
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.828 0.894
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.820 0.872
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.820 0.851
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.802 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5588s0009.1.p Myb 545 595

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nDi.2.2.2.g11481 Dirofilaria immitis nDi.2.2.2.g11481 N 0.000
EVEC_0000194801 Enterobius vermicularis EVEC_0000194801 N 0.000
HCOI00330900 Haemonchus contortus HCOI00330900 N 0.000
HCOI01806100 Haemonchus contortus HCOI01806100 N 0.000
HPBE_0000440101 Heligmosomoides bakeri HPBE_0000440101 N 0.000
HPBE_0001513201 Heligmosomoides bakeri HPBE_0001513201 N 0.000
HPLM_0002087001 Haemonchus placei HPLM_0002087001 N 0.000
L596_g11850 Steinernema carpocapsae L596_g11850 N 0.000
L889_g22661 Steinernema feltiae L889_g22661 N 0.000
L892_g11119 Steinernema scapterisci L892_g11119 N 0.000
L898_g21717 Steinernema monticolum L898_g21717 N 0.000
nAv.1.0.1.g02144 Acanthocheilonema viteae nAv.1.0.1.g02144 N 0.000
NBR_0000040001 Nippostrongylus brasiliensis NBR_0000040001 N 0.000
NBR_0000629001 Nippostrongylus brasiliensis NBR_0000629001 N 0.000
EEL_0000830101 Elaeophora elaphi EEL_0000830101 N 0.000
NECAME_08826 Necator americanus NECAME_08826 N 0.000
NECAME_13951 Necator americanus NECAME_13951 N 0.000
nLs.2.1.2.g07235 Litomosoides sigmodontis nLs.2.1.2.g07235 N 0.000
nOo.2.0.1.g08536 Onchocerca ochengi nOo.2.0.1.g08536 N 0.000
OESDEN_11949 Oesophagostomum dentatum OESDEN_11949 N 0.000
OESDEN_12713 Oesophagostomum dentatum OESDEN_12713 N 0.000
OFLC_0001102001 Onchocerca flexuosa OFLC_0001102001 N 0.000
SMUV_0000052701 Syphacia muris SMUV_0000052701 N 0.000
TCLT_0000096701 Thelazia callipaeda TCLT_0000096701 N 0.000
TCNE_0000182901 Toxocara canis TCNE_0000182901 N 0.000
TELCIR_06949 Teladorsagia circumcincta TELCIR_06949 N 0.000
TELCIR_17174 Teladorsagia circumcincta TELCIR_17174 N 0.000
TELCIR_18013 Teladorsagia circumcincta TELCIR_18013 N 0.000
ANCCAN_23216 Ancylostoma caninum ANCCAN_23216 N 0.000
Bm11274 Brugia malayi Bm11274 N 0.000
Bm2582 Brugia malayi Bm2582 N 0.000
CBG21175 Caenorhabditis briggsae CBG21175 N 0.000
CBN05278 Caenorhabditis brenneri CBN05278 N 0.000
CJA09215 Caenorhabditis japonica CJA09215 N 0.000
CRE29369 Caenorhabditis remanei CRE29369 N 0.000
LOAG_14115 Loa loa LOAG_14115 N 0.000
cnd-1 Caenorhabditis elegans WBGene00000561 N 0.000
ACAC_0001283001 Angiostrongylus cantonensis ACAC_0001283001 N 0.000
ACAC_0001410501 Angiostrongylus cantonensis ACAC_0001410501 N 0.000
ACOC_0000469401 Angiostrongylus costaricensis ACOC_0000469401 N 0.000
ACOC_0000510301 Angiostrongylus costaricensis ACOC_0000510301 N 0.000
ANCCAN_02247 Ancylostoma caninum ANCCAN_02247 N 0.000
WUBG_13863 Wuchereria bancrofti WUBG_13863 N 0.000
ANCCAN_24109 Ancylostoma caninum ANCCAN_24109 N 0.000
ANCCEY_00668 Ancylostoma ceylanicum ANCCEY_00668 N 0.000
ANCCEY_03736 Ancylostoma ceylanicum ANCCEY_03736 N 0.000
ANCDUO_15875 Ancylostoma duodenale ANCDUO_15875 N 0.000
ANCDUO_17699 Ancylostoma duodenale ANCDUO_17699 N 0.000
ASIM_0001057401 Anisakis simplex ASIM_0001057401 N 0.000
ASU_11875 Ascaris suum ASU_11875 N 0.000
BTMF_0001630801 Brugia timori BTMF_0001630801 N 0.000
CGOC_0001421301 Cylicostephanus goldi CGOC_0001421301 N 0.000
DICVIV_00659 Dictyocaulus viviparus DICVIV_00659 N 0.000
DICVIV_09133 Dictyocaulus viviparus DICVIV_09133 N 0.000
DME_0000059301 Dracunculus medinensis DME_0000059301 N 0.000