Cagra.5588s0009 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.5588s0009 T286166_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.828 0.894
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.828 0.894
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.820 0.872
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.820 0.851
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.802 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5588s0009.1.p Myb 545 595

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10000426m.g Capsella rubella Carubv10000426m.g I 0.909
TRP4 Arabidopsis thaliana AT5G13820 I 0.889
Bo2g011570 Brassica oleracea Bo2g011570 I 0.889
Bo3g009370 Brassica oleracea Bo3g009370 I 0.889
Bo9g166400 Brassica oleracea Bo9g166400 I 0.889
Bra006218 Brassica rapa Bra006218 I 0.889
Bra008800 Brassica rapa Bra008800 I 0.889
Bra023437 Brassica rapa Bra023437 I 0.889
TBP1 Arabidopsis lyrata fgenesh2_kg.6__1339__AT5G13820.1 I 0.889
POPTR_0008s05740 Populus trichocarpa POPTR_0008s05740 I 0.889
Ca_16107 Cicer arietinum Ca_16107 I 0.889
Bostr.2902s0116 Boechera stricta Bostr.2902s0116 I 0.889
Ciclev10030878m.g Citrus clementina Ciclev10030878m.g I 0.889
Lus10000947.g Linum usitatissimum Lus10000947.g I 0.889
Lus10002704.g Linum usitatissimum Lus10002704.g I 0.889
Lus10040285.g Linum usitatissimum Lus10040285.g I 0.889
MDP0000119184 Malus domestica MDP0000119184 I 0.889
SapurV1A.0451s0070 Salix purpurea SapurV1A.0451s0070 I 0.889
Thhalv10012893m.g Eutrema salsugineum Thhalv10012893m.g I 0.889
LjSGA_019393.1 Lotus japonicus LjSGA_019393.1 I 0.889
TRP3 Arabidopsis thaliana AT3G12560 I 0.880
Bo1g139150 Brassica oleracea Bo1g139150 I 0.880
Bo5g133380 Brassica oleracea Bo5g133380 I 0.880
Bra034751 Brassica rapa Bra034751 I 0.880
Bra038729 Brassica rapa Bra038729 I 0.880
TRFL9 Arabidopsis lyrata fgenesh2_kg.3__1313__AT3G12560.1 I 0.880
GLYMA11G34050 Glycine max GLYMA11G34050 I 0.880
GLYMA18G04251 Glycine max GLYMA18G04251 I 0.880
MTR_3g067935 Medicago truncatula MTR_3g067935 I 0.880
MTR_5g080010 Medicago truncatula MTR_5g080010 I 0.880
PRUPE_ppa002374mg Prunus persica PRUPE_ppa002374mg I 0.880
TCM_042704 Theobroma cacao TCM_042704 I 0.880
VIT_13s0019g01670 Vitis vinifera VIT_13s0019g01670 I 0.880
Ca_13309 Cicer arietinum Ca_13309 I 0.880
Cla004068 Citrullus lanatus Cla004068 I 0.880
Cucsa.165230 Cucumis sativus Cucsa.165230 I 0.880
Bostr.3640s0028 Boechera stricta Bostr.3640s0028 I 0.880
Cagra.5641s0019 Capsella grandiflora Cagra.5641s0019 I 0.880
Carubv10013179m.g Capsella rubella Carubv10013179m.g I 0.880
Eucgr.J01245 Eucalyptus grandis Eucgr.J01245 I 0.880
evm.TU.supercontig_1.421 Carica papaya evm.TU.supercontig_1.421 I 0.880
Gorai.011G266100 Gossypium raimondii Gorai.011G266100 I 0.880
Gorai.013G021300 Gossypium raimondii Gorai.013G021300 I 0.880
Thhalv10020283m.g Eutrema salsugineum Thhalv10020283m.g I 0.880
POPTR_0010s20990 Populus trichocarpa POPTR_0010s20990 I 0.871
SapurV1A.0281s0030 Salix purpurea SapurV1A.0281s0030 I 0.871
Pm018821 Prunus mume Pm018821 I 0.862
cassava31336.valid.m1 Manihot esculenta cassava31336.valid.m1 I 0.829
TRP2 Arabidopsis thaliana AT3G46590 D 0.828
TRFL1 Arabidopsis lyrata fgenesh2_kg.5__1021__AT3G46590.3 I 0.828
Cagra.0448s0008 Capsella grandiflora Cagra.0448s0008 I 0.828
Carubv10016934m.g Capsella rubella Carubv10016934m.g I 0.828
Thhalv10002472m.g Eutrema salsugineum Thhalv10002472m.g I 0.828
TRFL2 Arabidopsis lyrata Al_scaffold_0001_698 I 0.820
TRP5 Arabidopsis thaliana AT1G07540 D 0.820
BGIOSGA012326 Oryza indica BGIOSGA012326 I 0.820
Bo01118s020 Brassica oleracea Bo01118s020 I 0.820
Bra030689 Brassica rapa Bra030689 I 0.820
BRADI1G66677 Brachypodium distachyon BRADI1G66677 I 0.820
F775_17181 Aegilops tauschii F775_17181 I 0.820
GLYMA07G15940 Glycine max GLYMA07G15940 I 0.820
GLYMA13G41210 Glycine max GLYMA13G41210 I 0.820
GLYMA18G39911 Glycine max GLYMA18G39911 I 0.820
GRMZM2G063151 Zea mays GRMZM2G063151 I 0.820
GRMZM2G110309 Zea mays GRMZM2G110309 I 0.820
GSMUA_Achr7G15090_001 Musa acuminata GSMUA_Achr7G15090_001 I 0.820
GSMUA_Achr9G03910_001 Musa acuminata GSMUA_Achr9G03910_001 I 0.820
LPERR03G10840 Leersia perrieri LPERR03G10840 I 0.820
MLOC_59817 Hordeum vulgare MLOC_59817 I 0.820
MTR_7g061840 Medicago truncatula MTR_7g061840 I 0.820
OB03G22340 Oryza brachyantha OB03G22340 I 0.820
OBART03G12240 Oryza barthii OBART03G12240 I 0.820
OGLUM03G12230 Oryza glumaepatula OGLUM03G12230 I 0.820
OLONG_025333 Oryza longistaminata OLONG_025333 I 0.820
OMERI03G11490 Oryza meridionalis OMERI03G11490 I 0.820
ONIVA11G13450 Oryza nivara ONIVA11G13450 I 0.820
OPUNC03G11810 Oryza punctata OPUNC03G11810 I 0.820
ORGLA03G0118300 Oryza glaberrima ORGLA03G0118300 I 0.820
ORUFI03G12870 Oryza rufipogon ORUFI03G12870 I 0.820
OS03G0274300 Oryza sativa OS03G0274300 I 0.820
PGSC0003DMG400002138 Solanum tuberosum PGSC0003DMG400002138 I 0.820
PGSC0003DMG400023432 Solanum tuberosum PGSC0003DMG400023432 I 0.820
PGSC0003DMG400030324 Solanum tuberosum PGSC0003DMG400030324 I 0.820
POPTR_0001s24840 Populus trichocarpa POPTR_0001s24840 I 0.820
POPTR_0009s03730 Populus trichocarpa POPTR_0009s03730 I 0.820
PRUPE_ppa002403mg Prunus persica PRUPE_ppa002403mg I 0.820
PRUPE_ppa002522mg Prunus persica PRUPE_ppa002522mg I 0.820
Sb01g039650 Sorghum bicolor Sb01g039650 I 0.820
Si016548m.g Setaria italica Si016548m.g I 0.820
Si034524m.g Setaria italica Si034524m.g I 0.820
Solyc05g054410.2 Solanum lycopersicum Solyc05g054410.2 I 0.820
Solyc06g005590.2 Solanum lycopersicum Solyc06g005590.2 I 0.820
Solyc06g076270.2 Solanum lycopersicum Solyc06g076270.2 I 0.820
TCM_041816 Theobroma cacao TCM_041816 I 0.820
Traes_4AS_FA7E65184 Triticum aestivum Traes_4AS_FA7E65184 I 0.820
Traes_4BL_AB2636FB0 Triticum aestivum Traes_4BL_AB2636FB0 I 0.820
Traes_4DL_3849A9A5F Triticum aestivum Traes_4DL_3849A9A5F I 0.820
TRIUR3_18647 Triticum urartu TRIUR3_18647 I 0.820
VIT_06s0004g04940 Vitis vinifera VIT_06s0004g04940 I 0.820
Ca_02624 Cicer arietinum Ca_02624 I 0.820
Ca_21136 Cicer arietinum Ca_21136 I 0.820
Cla008361 Citrullus lanatus Cla008361 I 0.820
Pm000720 Prunus mume Pm000720 I 0.820
Pm002686 Prunus mume Pm002686 I 0.820
28880.m000016 Ricinus communis 28880.m000016 I 0.820
cassava19451.valid.m1 Manihot esculenta cassava19451.valid.m1 I 0.820
cassava19452.valid.m1 Manihot esculenta cassava19452.valid.m1 I 0.820
cassava19453.valid.m1 Manihot esculenta cassava19453.valid.m1 I 0.820
cassava30955.valid.m1 Manihot esculenta cassava30955.valid.m1 I 0.820
Cucsa.117790 Cucumis sativus Cucsa.117790 I 0.820
e_gw1.132.51.1 Physcomitrella patens e_gw1.132.51.1 I 0.820
mgf005791m Mimulus guttatus mgf005791m I 0.820
mgf007893m Mimulus guttatus mgf007893m I 0.820
Aquca_009_00956 Aquilegia coerulea Aquca_009_00956 I 0.820
Bostr.25219s0206 Boechera stricta Bostr.25219s0206 I 0.820
Bostr.26833s0301 Boechera stricta Bostr.26833s0301 I 0.820
Cagra.1317s0071 Capsella grandiflora Cagra.1317s0071 I 0.820
Cagra.1671s0374 Capsella grandiflora Cagra.1671s0374 I 0.820
Carubv10011259m.g Capsella rubella Carubv10011259m.g I 0.820
Carubv10026172m.g Capsella rubella Carubv10026172m.g I 0.820
Ciclev10027927m.g Citrus clementina Ciclev10027927m.g I 0.820
Eucgr.B02351 Eucalyptus grandis Eucgr.B02351 I 0.820
evm.TU.supercontig_81.127 Carica papaya evm.TU.supercontig_81.127 I 0.820
gene02230-v1.0-hybrid Fragaria vesca gene02230-v1.0-hybrid I 0.820
Gorai.003G130700 Gossypium raimondii Gorai.003G130700 I 0.820
Lus10010844.g Linum usitatissimum Lus10010844.g I 0.820
Lus10024385.g Linum usitatissimum Lus10024385.g I 0.820
MDP0000137531 Malus domestica MDP0000137531 I 0.820
MDP0000209974 Malus domestica MDP0000209974 I 0.820
orange1.1g042386m.g Citrus sinensis orange1.1g042386m.g I 0.820
Pavir.Ia03771 Panicum virgatum Pavir.Ia03771 I 0.820
Pavir.J18132 Panicum virgatum Pavir.J18132 I 0.820
SapurV1A.0041s0150 Salix purpurea SapurV1A.0041s0150 I 0.820
Thhalv10007062m.g Eutrema salsugineum Thhalv10007062m.g I 0.820
Thhalv10013086m.g Eutrema salsugineum Thhalv10013086m.g I 0.820
PK21687.1 Cannabis sativa PK21687.1 D 0.820
GLYMA12G06680 Glycine max GLYMA12G06680 I 0.810
Bostr.18473s0300 Boechera stricta Bostr.18473s0300 I 0.810
TRFL4 Arabidopsis lyrata Al_scaffold_0005_2280 I 0.802
AMTR_s00009p00107000 Amborella trichopoda AMTR_s00009p00107000 I 0.802
AMTR_s00012p00239180 Amborella trichopoda AMTR_s00012p00239180 I 0.802
TRFL4 Arabidopsis thaliana AT3G53790 I 0.802
TRP1 Arabidopsis thaliana AT5G59430 D 0.802
Bo9g139390 Brassica oleracea Bo9g139390 I 0.802
Bra002566 Brassica rapa Bra002566 I 0.802
ATTRP1 Arabidopsis lyrata fgenesh2_kg.8__1886__AT5G59430.4 I 0.802
GLYMA11G14760 Glycine max GLYMA11G14760 I 0.802
GLYMA15G04200 Glycine max GLYMA15G04200 I 0.802
GRMZM2G133016 Zea mays GRMZM2G133016 I 0.802
GSMUA_Achr10G22620_001 Musa acuminata GSMUA_Achr10G22620_001 I 0.802
GSMUA_Achr8G20810_001 Musa acuminata GSMUA_Achr8G20810_001 I 0.802
MTR_2g097290 Medicago truncatula MTR_2g097290 I 0.802
POPTR_0006s08680 Populus trichocarpa POPTR_0006s08680 I 0.802
Sb06g019970 Sorghum bicolor Sb06g019970 I 0.802
Si000591m.g Setaria italica Si000591m.g I 0.802
TCM_021921 Theobroma cacao TCM_021921 I 0.802
TRFL4 Vitis vinifera VIT_08s0007g00500 I 0.802
gw1.98.100.1 Physcomitrella patens gw1.98.100.1 I 0.802
Aquca_003_00096 Aquilegia coerulea Aquca_003_00096 I 0.802
gene18432-v1.0-hybrid Fragaria vesca gene18432-v1.0-hybrid I 0.802
gene26492-v1.0-hybrid Fragaria vesca gene26492-v1.0-hybrid I 0.802
Gorai.006G172000 Gossypium raimondii Gorai.006G172000 I 0.802
Pavir.Gb01315 Panicum virgatum Pavir.Gb01315 I 0.802
SapurV1A.0040s0420 Salix purpurea SapurV1A.0040s0420 I 0.802
Thhalv10011058m.g Eutrema salsugineum Thhalv10011058m.g I 0.802
Solyc04g011650.2 Solanum lycopersicum Solyc04g011650.2 I 0.799
Pavir.Ea04142 Panicum virgatum Pavir.Ea04142 I 0.788
Gorai.010G200900 Gossypium raimondii Gorai.010G200900 I 0.785
Si009551m.g Setaria italica Si009551m.g I 0.784
PGSC0003DMG400006353 Solanum tuberosum PGSC0003DMG400006353 I 0.781
BGIOSGA005358 Oryza indica BGIOSGA005358 I 0.771
Bo5g008270 Brassica oleracea Bo5g008270 I 0.771
Bra015585 Brassica rapa Bra015585 I 0.771
LPERR02G30830 Leersia perrieri LPERR02G30830 I 0.771
OB02G44060 Oryza brachyantha OB02G44060 I 0.771
OBART02G37370 Oryza barthii OBART02G37370 I 0.771
OGLUM02G38510 Oryza glumaepatula OGLUM02G38510 I 0.771
OLONG_013725 Oryza longistaminata OLONG_013725 I 0.771
OMERI01G33350 Oryza meridionalis OMERI01G33350 I 0.771
ONIVA02G40130 Oryza nivara ONIVA02G40130 I 0.771
OPUNC02G34540 Oryza punctata OPUNC02G34540 I 0.771
ORGLA02G0325900 Oryza glaberrima ORGLA02G0325900 I 0.771
ORUFI02G38880 Oryza rufipogon ORUFI02G38880 I 0.771
BRADI2G62170 Brachypodium distachyon BRADI2G62170 I 0.768
F775_10373 Aegilops tauschii F775_10373 I 0.768
MLOC_57410 Hordeum vulgare MLOC_57410 I 0.768
TRAES3BF045500220CFD_g Triticum aestivum TRAES3BF045500220CFD_g I 0.768
Gorai.009G098300 Gossypium raimondii Gorai.009G098300 I 0.765
SELMODRAFT_121021 Selaginella moellendorffii SELMODRAFT_121021 I 0.753
SELMODRAFT_123062 Selaginella moellendorffii SELMODRAFT_123062 I 0.753
Pavir.J14051 Panicum virgatum Pavir.J14051 I 0.753
LjSGA_017694.1 Lotus japonicus LjSGA_017694.1 I 0.736
Cla013524 Citrullus lanatus Cla013524 I 0.731
Cucsa.138770 Cucumis sativus Cucsa.138770 I 0.731
Carubv10018629m.g Capsella rubella Carubv10018629m.g I 0.713
Bo4g120560 Brassica oleracea Bo4g120560 I 0.690
SELMODRAFT_131544 Selaginella moellendorffii SELMODRAFT_131544 I 0.678