CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_030_00013
(
Aquilegia coerulea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Aquca_030_00013
T297204_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC053
M07202_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a
0.919
0.851
NAC053
M07203_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_col
0.919
0.851
NAC053
M11079_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G10500_Q2
0.919
0.851
NAC078
M02372_2.00
Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN
PBM
Weirauch et al.(2014)
pTH7209
0.915
0.860
NAC078
M07226_2.00
Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA
Dap-seq
OMalley et al.(2016)
NAC2_colamp_a
0.915
0.860
NAC078
M07227_2.00
Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH
Dap-seq
OMalley et al.(2016)
NAC2_col_v3a
0.915
0.860
NAC078
M11083_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC078_Q2
0.915
0.860
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_030_00013.1
NAC/NAM
17
143
APGFRFHPTDEELVIYYLKRKVCGKPFRIDAISVIDIYKLEPWDLPDRSRLKSRDLEWYFFSALDKKYGNGWRTNRATEQGYWKTTGKDRSVRRGEKTVGMKKTLVFHIGRAPHGERTNWVMHEYRL
Aquca_030_00013.2
NAC/NAM
17
143
APGFRFHPTDEELVIYYLKRKVCGKPFRIDAISVIDIYKLEPWDLPDRSRLKSRDLEWYFFSALDKKYGNGWRTNRATEQGYWKTTGKDRSVRRGEKTVGMKKTLVFHIGRAPHGERTNWVMHEYRL
Aquca_030_00013.3
NAC/NAM
17
143
APGFRFHPTDEELVIYYLKRKVCGKPFRIDAISVIDIYKLEPWDLPDRSRLKSRDLEWYFFSALDKKYGNGWRTNRATEQGYWKTTGKDRSVRRGEKTVGMKKTLVFHIGRAPHGERTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Aquilegia coerulea
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy