Carubv10002548m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10002548m.g T297457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC083
M02374_2.00 		Arabidopsis thaliana
WYACGYAANN
NNTTRCGTRW		 PBM
Weirauch et al.(2014)
pTH7308 		0.953 0.943
NAC083
M07230_2.00 		Arabidopsis thaliana
TRCKTRWNNNDYAMG
CKTRHNNNWYAMGYA		 Dap-seq
OMalley et al.(2016)
ANAC083_colamp_a 		0.953 0.943
NAC083
M07231_2.00 		Arabidopsis thaliana
TTNCKTRWNNHDYACGYWA
TWRCGTRHDNNWYAMGNAA		 Dap-seq
OMalley et al.(2016)
ANAC083_col_v3a 		0.953 0.943
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002548m NAC/NAM 15 138

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC083 Arabidopsis thaliana AT5G13180 D 0.953
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.928
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.898
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I 0.893
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.905
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.876
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.950
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.950
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.921
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.927
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.927
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I 0.880
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.921
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.914
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.891
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.888
MDP0000126517 Malus domestica MDP0000126517 I 0.914
MDP0000130123 Malus domestica MDP0000130123 I 0.923
MDP0000147080 Malus domestica MDP0000147080 I 0.874
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.921
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.925
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.911
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.933
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.893
PK12461.1 Cannabis sativa PK12461.1 I 0.911
NAC041 Arabidopsis thaliana AT2G33480 I 0.885
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.887
Bo2g011120 Brassica oleracea Bo2g011120 I 0.936
Bo3g009040 Brassica oleracea Bo3g009040 I 0.930
Bo4g043670 Brassica oleracea Bo4g043670 I 0.881
Bo9g168950 Brassica oleracea Bo9g168950 I 0.929
Bra005492 Brassica rapa Bra005492 I 0.881
Bra006186 Brassica rapa Bra006186 I 0.927
Bra008849 Brassica rapa Bra008849 I 0.936
Bra023395 Brassica rapa Bra023395 I 0.929
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.885
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.911
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.912
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.918
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.928
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.924
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.932
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.953
TCM_008477 Theobroma cacao TCM_008477 I 0.921
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.914
Cla001517 Citrullus lanatus Cla001517 I 0.929
Cla011059 Citrullus lanatus Cla011059 I 0.881
Pm007070 Prunus mume Pm007070 I 0.932
30128.m009035 Ricinus communis 30128.m009035 I 0.922
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.920