Pavir.Aa00442 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Aa00442 T298740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.958 0.574
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.958 0.574
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.946 0.591
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.946 0.591
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.939 0.557
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.939 0.557
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00442.1.p NAC/NAM 59 197
Pavir.Aa00442.2.p NAC/NAM 47 185
Pavir.Aa00442.3.p NAC/NAM 59 197
Pavir.Aa00442.4.p NAC/NAM 47 185

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.011210 Cucumis sativus Cucsa.011210 I 0.886
Carubv10009087m.g Capsella rubella Carubv10009087m.g I 0.908
Carubv10002665m.g Capsella rubella Carubv10002665m.g I 0.000
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I 0.000
Cagra.11546s0003 Capsella grandiflora Cagra.11546s0003 I 0.908
Bostr.2902s0186 Boechera stricta Bostr.2902s0186 I 0.000
Bostr.12659s0396 Boechera stricta Bostr.12659s0396 I 0.916
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I 0.910
mgf018486m Mimulus guttatus mgf018486m I 0.885
mgf012882m Mimulus guttatus mgf012882m I 0.947
Cucsa.283900 Cucumis sativus Cucsa.283900 I 0.965
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.945
cassava3690.m1 Manihot esculenta cassava3690.m1 I 0.896
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.930
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I 0.968
29917.m002016 Ricinus communis 29917.m002016 I 0.923
29738.m001046 Ricinus communis 29738.m001046 I 0.968
Pm029010 Prunus mume Pm029010 I 0.965
Pm015625 Prunus mume Pm015625 I 0.930
Cla020673 Citrullus lanatus Cla020673 I 0.965
Ca_24772 Cicer arietinum Ca_24772 I 0.946
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.943
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.970
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.922
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I 0.960
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.966
PK25812.1 Cannabis sativa PK25812.1 I 0.968
PK17141.1 Cannabis sativa PK17141.1 I 0.898
Thhalv10007551m.g Eutrema salsugineum Thhalv10007551m.g I 0.911
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I 0.968
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.927
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.927
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I 0.968
Cla004701 Citrullus lanatus Cla004701 I 0.902
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.981
orange1.1g014310m.g Citrus sinensis orange1.1g014310m.g I 0.931
MDP0000663564 Malus domestica MDP0000663564 I 0.879
Lus10021708.g Linum usitatissimum Lus10021708.g I 0.969
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.964
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.955
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.938
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I 0.966
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.942
Ciclev10031598m.g Citrus clementina Ciclev10031598m.g I 0.926
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.964
PGSC0003DMG400012607 Solanum tuberosum PGSC0003DMG400012607 I 0.000
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I 0.967
MTR_7g033320 Medicago truncatula MTR_7g033320 I 0.000
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.965
MTR_1g093680 Medicago truncatula MTR_1g093680 I 0.961
MTR_1g093670 Medicago truncatula MTR_1g093670 I 0.975
GSMUA_Achr6G11230_001 Musa acuminata GSMUA_Achr6G11230_001 I 0.946
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.982
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.960
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.967
MTR_5g053430 Medicago truncatula MTR_5g053430 I 0.934
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.969
F775_30638 Aegilops tauschii F775_30638 I 0.932
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.939
Bra024733 Brassica rapa Bra024733 I 0.915
Bra006257 Brassica rapa Bra006257 I 0.877
Bo5g043100 Brassica oleracea Bo5g043100 I 0.915
anac085 Arabidopsis thaliana AT5G14490 I 0.000
SOG1 Arabidopsis thaliana AT1G25580 I 0.908
anac085 Arabidopsis lyrata Al_scaffold_0006_1351 I 0.000
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.954
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I 0.984
Traes_7AS_6E6A5CD04 Triticum aestivum Traes_7AS_6E6A5CD04 I 0.983
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.932
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.932
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.956
TCM_016984 Theobroma cacao TCM_016984 I 0.943
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I 0.984
TRIUR3_21992 Triticum urartu TRIUR3_21992 I 0.983
TCM_011869 Theobroma cacao TCM_011869 I 0.969
Solyc05g009840.2 Solanum lycopersicum Solyc05g009840.2 I 0.956
Si024889m.g Setaria italica Si024889m.g I 0.957
SOG1 Arabidopsis lyrata scaffold_102939.1 I 0.908
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I 0.913
PRUPE_ppa005648mg Prunus persica PRUPE_ppa005648mg I 0.960
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I 0.973
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I 0.960
anac044 Arabidopsis thaliana AT3G01600 N 0.000
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N 0.000
Thhalv10022099m.g Eutrema salsugineum Thhalv10022099m.g N 0.000
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N 0.000
Ca_23230 Cicer arietinum Ca_23230 N 0.903
Thhalv10015728m.g Eutrema salsugineum Thhalv10015728m.g N 0.000
Bra001000 Brassica rapa Bra001000 N 0.000
GLYMA16G07501 Glycine max GLYMA16G07501 N 0.896
GLYMA19G00640 Glycine max GLYMA19G00640 N 0.907
MDP0000283975 Malus domestica MDP0000283975 N 0.876
GLYMA19G08510 Glycine max GLYMA19G08510 N 0.907
Lus10003668.g Linum usitatissimum Lus10003668.g N 0.000
Carubv10014004m.g Capsella rubella Carubv10014004m.g N 0.000