GA21254 (Drosophila pseudoobscura)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 FBgn0081242 T305304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hr39
M03942_2.00 		Drosophila melanogaster
CAAGGHCRN
NYGDCCTTG		 SELEX
Nitta et al.(2015)
Hr39_1 		0.990 1.000
Hr39
M03943_2.00 		Drosophila melanogaster
CAAGGYCRH
DYGRCCTTG		 SELEX
Nitta et al.(2015)
Hr39_2 		0.990 1.000
NR5A2
M05589_2.00 		Homo sapiens
YCAAGGYCRYGRCCTTSR
YSAAGGYCRYGRCCTTGR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_1 		0.956 0.629
NR5A2
M05590_2.00 		Homo sapiens
NYCAAGGTCAH
DTGACCTTGRN		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_2 		0.956 0.629
NR5A2
M05591_2.00 		Homo sapiens
YGRCCTTSVNYSAAGGYCR
YGRCCTTSRNBSAAGGYCR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_3 		0.956 0.629
NR5A2
M09271_2.00 		Homo sapiens
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
NR5A2_HUMAN.H11MO.0.B 		0.956 0.629
NR5A2
M11126_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q5_01 		0.956 0.629
NR5A2
M11127_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q5 		0.956 0.629
NR5A2
M11128_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q6 		0.956 0.629
NR5A2
M05592_2.00 		Homo sapiens
YCAAGGYCRYGACCTTSR
YSAAGGTCRYGRCCTTGR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_1 		0.956 0.629
NR5A2
M05593_2.00 		Homo sapiens
NYCAAGGTCRH
DYGACCTTGRN		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_2 		0.956 0.629
NR5A2
M05594_2.00 		Homo sapiens
YGRCCTTSVNBSAAGGYCR
YGRCCTTSVNBSAAGGYCR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_3 		0.956 0.629
Nr5a2
M00816_2.00 		Mus musculus
VAAGGTCR
YGACCTTB		 PBM
Weirauch et al.(2013)
pTH3468 		0.955 0.614
Nr5a2
M08158_2.00 		Mus musculus
VRDBTCAAGGYCANN
NNTGRCCTTGAVHYB		 ChIP-seq
Mathelier et al.(2014)
MA0505.1 		0.955 0.614
Nr5a2
M09320_2.00 		Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
NR5A2_MOUSE.H11MO.0.A 		0.955 0.614
Nr5a2
M09616_2.00 		Mus musculus
BYCAAGGYCA
TGRCCTTGRV		 Misc
Heinz et al.(2010)
Pancreas-LRH1_GSE34295 		0.955 0.614
Nr5a2
M09615_2.00 		Mus musculus
BYCAAGGYCA
TGRCCTTGRV		 Misc
Heinz et al.(2010)
mES-Nr5a2_GSE19019 		0.955 0.614
NR5A1
M05613_2.00 		Homo sapiens
NNCAAGGYCRN
NYGRCCTTGNN		 SELEX
Yin et al.(2017)
NR5A1_FL_HT-SELEX 		0.953 0.600
Nr5a1
M09322_2.00 		Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
STF1_MOUSE.H11MO.0.B 		0.953 0.600
NR5A1
M11142_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q5_01 		0.953 0.600
NR5A1
M11143_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q5 		0.953 0.600
NR5A1
M11144_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q6_01 		0.953 0.600
NR5A1
M11145_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q6 		0.953 0.600
NR5A1
M05614_2.00 		Homo sapiens
NNSAAGGHCRN
NYGDCCTTSNN		 SELEX
Yin et al.(2017)
NR5A1_FL_Methyl-HT-SELEX 		0.953 0.600
ftz-f1
M02407_2.00 		Drosophila melanogaster
RRGGTCAH
DTGACCYY		 PBM
Weirauch et al.(2014)
pTH5709 		0.952 0.629
ftz-f1
M06417_2.00 		Drosophila melanogaster
MMRKYYSAAGGWCRCYGM
KCRGYGWCCTTSRRMYKK		 B1H
Zhu et al.(2011)
ftz-f1_FlyReg_FBgn0001078 		0.952 0.629
ftz-f1
M06418_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
ftz-f1_SANGER_5_FBgn0001078 		0.952 0.629
nhr-25
M08226_2.00 		Caenorhabditis elegans
MAAGGTCA
TGACCTTK		 ChIP-seq
Contrino et al.(2012)
Mw160 		0.950 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0287844 Nuclear receptor 392 461

Links

Other Nuclear receptor family TFs
Other Drosophila pseudoobscura TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.362.4.1 Physcomitrella patens e_gw1.362.4.1 D 0.000
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I 0.000
RR23 Oryza indica BGIOSGA005436 I 0.000
RR24 Oryza indica BGIOSGA007015 I 0.000
RR22 Oryza indica BGIOSGA022430 I 0.000
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.000
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.000
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.000
F775_13501 Aegilops tauschii F775_13501 I 0.000
F775_14758 Aegilops tauschii F775_14758 I 0.000
F775_19079 Aegilops tauschii F775_19079 I 0.000
F775_26936 Aegilops tauschii F775_26936 I 0.000
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.000
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.000
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.000
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.000
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.000
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.000
GLYMA17G33230 Glycine max GLYMA17G33230 I 0.000
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.000
GRMZM2G401835 Zea mays GRMZM2G401835 I 0.000
GRMZM2G409974 Zea mays GRMZM2G409974 I 0.000
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.000
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I 0.000
GSMUA_Achr3G13400_001 Musa acuminata GSMUA_Achr3G13400_001 I 0.000
GSMUA_Achr8G30850_001 Musa acuminata GSMUA_Achr8G30850_001 I 0.000
GSMUA_AchrUn_randomG18820_001 Musa acuminata GSMUA_AchrUn_randomG18820_001 I 0.000
LPERR02G05460 Leersia perrieri LPERR02G05460 I 0.000
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.000
MLOC_11341 Hordeum vulgare MLOC_11341 I 0.000
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.000
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.000
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.000
MTR_3g102590 Medicago truncatula MTR_3g102590 I 0.000
MTR_3g106220 Medicago truncatula MTR_3g106220 I 0.000
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.000
OB02G15530 Oryza brachyantha OB02G15530 I 0.000
OB02G42700 Oryza brachyantha OB02G42700 I 0.000
OB06G14930 Oryza brachyantha OB06G14930 I 0.000
OBART02G06200 Oryza barthii OBART02G06200 I 0.000
OBART06G05360 Oryza barthii OBART06G05360 I 0.000
OGLUM02G06200 Oryza glumaepatula OGLUM02G06200 I 0.000
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.000
OLONG_005451 Oryza longistaminata OLONG_005451 I 0.000
OLONG_007266 Oryza longistaminata OLONG_007266 I 0.000
OMERI02G07120 Oryza meridionalis OMERI02G07120 I 0.000
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.000
ONIVA02G07230 Oryza nivara ONIVA02G07230 I 0.000
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.000
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.000
ORGLA02G0057500 Oryza glaberrima ORGLA02G0057500 I 0.000
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.000
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.000
ORUFI02G06340 Oryza rufipogon ORUFI02G06340 I 0.000
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.000
RR24 Oryza sativa OS02G0182100 I 0.000
RR23 Oryza sativa OS02G0796500 I 0.000
RR22 Oryza sativa OS06G0183100 I 0.000
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.000
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.000
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I 0.000
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.000
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.000
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.000
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I 0.000
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.000
PRUPE_ppa024819mg Prunus persica PRUPE_ppa024819mg I 0.000
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.000
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.000
Sb05g004150 Sorghum bicolor Sb05g004150 I 0.000
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.000
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.000
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.000
Si006013m.g Setaria italica Si006013m.g I 0.000
Si016546m.g Setaria italica Si016546m.g I 0.000
Si016630m.g Setaria italica Si016630m.g I 0.000
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.000
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I 0.000
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.000
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.000
TCM_011067 Theobroma cacao TCM_011067 I 0.000
TCM_021300 Theobroma cacao TCM_021300 I 0.000
TCM_036926 Theobroma cacao TCM_036926 I 0.000
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.000
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.000
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.000
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.000
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.000
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.000
Traes_7AS_1318B59D3 Triticum aestivum Traes_7AS_1318B59D3 I 0.000
Traes_7AS_503B57D77 Triticum aestivum Traes_7AS_503B57D77 I 0.000
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.000
Traes_7BS_17C8D2707 Triticum aestivum Traes_7BS_17C8D2707 I 0.000
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.000
Traes_7DS_327FBC2CA Triticum aestivum Traes_7DS_327FBC2CA I 0.000
TRIUR3_24314 Triticum urartu TRIUR3_24314 I 0.000
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.000
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.000
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.000
ARR14 Vitis vinifera VIT_01s0011g05830 I 0.000
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.000
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.000
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.000
Ca_02989 Cicer arietinum Ca_02989 I 0.000
Cla009424 Citrullus lanatus Cla009424 I 0.000
Cla021325 Citrullus lanatus Cla021325 I 0.000
Cla022101 Citrullus lanatus Cla022101 I 0.000
Pm005710 Prunus mume Pm005710 I 0.000
27647.m000179 Ricinus communis 27647.m000179 I 0.000
29889.m003245 Ricinus communis 29889.m003245 I 0.000
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.000
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.000
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.000
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.000
mgf001591m Mimulus guttatus mgf001591m I 0.000
mgf010113m Mimulus guttatus mgf010113m I 0.000
mgf012203m Mimulus guttatus mgf012203m I 0.000
mgf014863m Mimulus guttatus mgf014863m I 0.000
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.000
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.000
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I 0.000
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.000
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.000
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I 0.000
e_gw1.1.548.1 Coccomyxa subellipsoidea C169 e_gw1.1.548.1 I 0.000
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.000
Eucgr.C04050 Eucalyptus grandis Eucgr.C04050 I 0.000
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I 0.000
evm.TU.supercontig_127.10 Carica papaya evm.TU.supercontig_127.10 I 0.000
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I 0.000
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.000
gene05178-v1.0-hybrid Fragaria vesca gene05178-v1.0-hybrid I 0.000
gene15029-v1.0-hybrid Fragaria vesca gene15029-v1.0-hybrid I 0.000
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.000
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I 0.000
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I 0.000
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.000
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.000
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.000
MDP0000224740 Malus domestica MDP0000224740 I 0.000
MDP0000290818 Malus domestica MDP0000290818 I 0.000
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.000
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I 0.000
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.000
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.000
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.000
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.000
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.000
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I 0.000
SapurV1A.0705s0030 Salix purpurea SapurV1A.0705s0030 I 0.000
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.000
SapurV1A.0739s0030 Salix purpurea SapurV1A.0739s0030 I 0.000
PK02601.1 Cannabis sativa PK02601.1 I 0.000
PK26059.1 Cannabis sativa PK26059.1 I 0.000
CM1729.100.nc Lotus japonicus CM1729.100.nc I 0.000
PDK_20s13009423g003 Phoenix dactylifera PDK_20s13009423g003 I 0.000
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.000
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.000
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.000
MTR_3g102600 Medicago truncatula MTR_3g102600 N 0.000