Gfo_R003636 (Geospiza fortis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Gfo_R003636 T306740_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PGR
M03923_2.00 		Homo sapiens
DGNACANNNYGTNCY
RGNACRNNNTGTNCH		 SELEX
Nitta et al.(2015)
PGR_1 		0.993 1.000
PGR
M09266_2.00 		Homo sapiens
RGNACWBYBTGTNCYN
NRGNACAVRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_HUMAN.H11MO.0.A 		0.993 1.000
Pgr
M09326_2.00 		Mus musculus
RGNACWBYNTGTNCY
RGNACANRVWGTNCY		 Misc
Kulakovskiy et al.(2013)
PRGR_MOUSE.H11MO.0.A 		0.993 1.000
PGR
M09603_2.00 		Homo sapiens
RNACWNNNWGTNCHN
NDGNACWNNNWGTNY		 Misc
Heinz et al.(2010)
T47D-PR_GSE31130 		0.993 1.000
PGR
M11095_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_01 		0.993 1.000
PGR
M11096_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_02 		0.993 1.000
PGR
M11097_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PR_Q6 		0.993 1.000
NR3C2
M02395_2.00 		Homo sapiens
NNRGDACAN
NTGTHCYNN		 PBM
Weirauch et al.(2014)
pTH5924 		0.990 0.900
NR3C2
M03382_2.00 		Homo sapiens
NRGDACAHDRTGTHCYN
NRGDACAYHDTGTHCYN		 SELEX
Jolma et al.(2013)
NR3C2_1 		0.990 0.900
NR3C2
M05637_2.00 		Homo sapiens
NGNACRNNNYGTNCN
NGNACRNNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_HT-SELEX 		0.990 0.900
NR3C2
M05638_2.00 		Homo sapiens
NGNACRNNVYGTNCN
NGNACRBNNYGTNCN		 SELEX
Yin et al.(2017)
NR3C2_eDBD_Methyl-HT-SELEX 		0.990 0.900
Nr3c1
M05886_2.00 		Mus musculus
DGDACDBYNTGTNCY
RGNACANRVHGTHCH		 SMiLE-seq
Isakova et al.(2017)
GR 		0.989 0.886
Nr3c1
M09318_2.00 		Mus musculus
RGNACABYNTGTNCY
RGNACANRVTGTNCY		 Misc
Kulakovskiy et al.(2013)
GCR_MOUSE.H11MO.0.A 		0.989 0.886
Nr3c1
M09614_2.00 		Mus musculus
NRGDACABNNTGTNC
GNACANNVTGTHCYN		 Misc
Heinz et al.(2010)
RAW264.7-GRE_Unpublished 		0.989 0.886
NR3C1
M03366_2.00 		Homo sapiens
NRGWACAYNRTGTWCYH
DRGWACAYNRTGTWCYN		 SELEX
Jolma et al.(2013)
NR3C1_1 		0.984 0.843
NR3C1
M05587_2.00 		Homo sapiens
RGDACAYWDTGTHCY
RGDACAHWRTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_HT-SELEX 		0.984 0.843
NR3C1
M07986_2.00 		Homo sapiens
DGNACABYBTGTNC
GNACAVRVTGTNCH		 ChIP-seq
Gerstein et al.(2012)
A549_GR_HudsonAlpha 		0.984 0.843
NR3C1
M07987_2.00 		Homo sapiens
NNNNRGNACAYBBTGTHCYNN
NNRGDACAVVRTGTNCYNNNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_GR_HudsonAlpha 		0.984 0.843
NR3C1
M09270_2.00 		Homo sapiens
DGNACABKNTGTNCY
RGNACANMVTGTNCH		 Misc
Kulakovskiy et al.(2013)
GCR_HUMAN.H11MO.0.A 		0.984 0.843
NR3C1
M09607_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
A549-GR_GSE32465 		0.984 0.843
NR3C1
M11119_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_01 		0.984 0.843
NR3C1
M11120_2.00 		Homo sapiens
KKYACMRDVTGTYCTK
MAGRACABHYKGTRMM		 Transfac
Matys et al.(2006)
V$GRE_C 		0.984 0.843
NR3C1
M11121_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q4 		0.984 0.843
NR3C1
M11122_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_01 		0.984 0.843
NR3C1
M11123_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GR_Q6_02 		0.984 0.843
NR3C1
M11124_2.00 		Homo sapiens
NNWGVACANWDNNDNBHNN
NNDVNHNNHWNTGTBCWNN		 Transfac
Matys et al.(2006)
V$GR_Q6 		0.984 0.843
NR3C1
M11125_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR3C1_04 		0.984 0.843
NR3C1
M05588_2.00 		Homo sapiens
RGDACANDRYGTHCY
RGDACRYHNTGTHCY		 SELEX
Yin et al.(2017)
NR3C1_eDBD_Methyl-HT-SELEX 		0.984 0.843
Ar
M00821_2.00 		Mus musculus
NRRGAACAYN
NRTGTTCYYN		 PBM
Weirauch et al.(2013)
pTH1739 		0.977 0.800
AR
M03389_2.00 		Homo sapiens
DRGWACRHVDYGTWCCY
RGGWACRHBDYGTWCYH		 SELEX
Jolma et al.(2013)
AR_1 		0.977 0.800
AR
M03390_2.00 		Homo sapiens
DRGWACAYNRTGTWCYY
RRGWACAYNRTGTWCYH		 SELEX
Jolma et al.(2013)
AR_2 		0.977 0.800
Ar
M03436_2.00 		Mus musculus
NRGHACAYNVYGTWCYN
NRGWACRBNRTGTDCYN		 SELEX
Jolma et al.(2013)
Ar_1 		0.977 0.800
AR
M09288_2.00 		Homo sapiens
DRYAAAYADNNNRGNACA
TGTNCYNNNHTRTTTRYH		 Misc
Kulakovskiy et al.(2013)
ANDR_HUMAN.H11MO.0.A 		0.977 0.800
Ar
M09331_2.00 		Mus musculus
NRGNACABRVTGTNCY
RGNACABYVTGTNCYN		 Misc
Kulakovskiy et al.(2013)
ANDR_MOUSE.H11MO.0.A 		0.977 0.800
AR
M09610_2.00 		Homo sapiens
NRGNACABNVTGTNCY
RGNACABNVTGTNCYN		 Misc
Heinz et al.(2010)
LNCAP-AR_GSE27824 		0.977 0.800
AR
M09609_2.00 		Homo sapiens
SHDRGVACAS
STGTBCYHDS		 Misc
Heinz et al.(2010)
LNCaP-AR_GSE27824 		0.977 0.800
AR
M11157_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_01 		0.977 0.800
AR
M11158_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_02 		0.977 0.800
AR
M11159_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_03 		0.977 0.800
AR
M11160_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_04 		0.977 0.800
AR
M11161_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_11 		0.977 0.800
AR
M11162_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_13 		0.977 0.800
AR
M11163_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_14_H 		0.977 0.800
AR
M11164_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q2 		0.977 0.800
AR
M11165_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6_01 		0.977 0.800
AR
M11166_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AR_Q6 		0.977 0.800
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R003636 Nuclear receptor 22 91

Links

Other Nuclear receptor family TFs
Other Geospiza fortis TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTSYG00000002965 Tarsius syrichta ENSTSYG00000002965 I
ENSSARG00000001033 Sorex araneus ENSSARG00000001033 I
BGLB004779 Biomphalaria glabrata BGLB004779 N
DILT_0001817101 Diphyllobothrium latum DILT_0001817101 N
ANCDUO_08931 Ancylostoma duodenale ANCDUO_08931 N
PPAI007566 Phlebotomus papatasi PPAI007566 N
PPAI007558 Phlebotomus papatasi PPAI007558 N
PPAI002081 Phlebotomus papatasi PPAI002081 N
LLOJ003748 Lutzomyia longipalpis LLOJ003748 N
BGLB006532 Biomphalaria glabrata BGLB006532 N
GPUH_0000522701 Gongylonema pulchrum GPUH_0000522701 N
ASTEI08594 Anopheles stephensi ASTEI08594 N
ASIS022478 Anopheles sinensis ASIS022478 N
AQUA010448 Anopheles quadriannulatus AQUA010448 N
AQUA000258 Anopheles quadriannulatus AQUA000258 N
AMIN008750 Anopheles minimus AMIN008750 N
AMEM003406 Anopheles merus AMEM003406 N
AMEC008583 Anopheles melas AMEC008583 N
AFUN010566 Anopheles funestus AFUN010566 N
AFAF003029 Anopheles farauti AFAF003029 N
PXEA_0001168701 Protopolystoma xenopodis PXEA_0001168701 N
TsM_000048500 Taenia solium TsM_000048500 N
TRE_0001960401 Trichobilharzia regenti TRE_0001960401 N
SSLN_0000607001 Schistocephalus solidus SSLN_0000607001 N
SPER_0003400201 Spirometra erinaceieuropaei SPER_0003400201 N
SMTD_0001338101 Schistosoma mattheei SMTD_0001338101 N
SMRZ_0000684401 Schistosoma margrebowiei SMRZ_0000684401 N
scaffold2695-EXSNAP2012.1 Pristionchus exspectatus scaffold2695-EXSNAP2012.1 N
PXEA_0002770801 Protopolystoma xenopodis PXEA_0002770801 N
EEL_0000897001 Elaeophora elaphi EEL_0000897001 N
PXEA_0000565701 Protopolystoma xenopodis PXEA_0000565701 N
PEQ_0000369901 Parascaris equorum PEQ_0000369901 N
nOo.2.0.1.g11026 Onchocerca ochengi nOo.2.0.1.g11026 N
nOo.2.0.1.g05407 Onchocerca ochengi nOo.2.0.1.g05407 N
nLs.2.1.2.g03987 Litomosoides sigmodontis nLs.2.1.2.g03987 N
GPUH_0000570001 Gongylonema pulchrum GPUH_0000570001 N
AEPI001846 Anopheles epiroticus AEPI001846 N
TBR1 Choloepus hoffmanni ENSCHOG00000006154 N
KGM_15499 Danaus plexippus KGM_15499 N
HelroG92844 Helobdella robusta HelroG92844 N
GD16690 Drosophila simulans FBgn0188279 N
GG18705 Drosophila erecta FBgn0110914 N
TBX19 Tupaia belangeri ENSTBEG00000000750 N
ENSPMAG00000002216 Petromyzon marinus ENSPMAG00000002216 N
ENSOANG00000030458 Ornithorhynchus anatinus ENSOANG00000030458 N
ENSLACG00000004796 Latimeria chalumnae ENSLACG00000004796 N
L798_14237 Zootermopsis nevadensis L798_14237 N
ENSACAG00000021966 Anolis carolinensis ENSACAG00000021966 N
BGIBMGA012897 Bombyx mori BGIBMGA012897 N
AGAP011711 Anopheles gambiae AGAP011711 N
ADAC003415 Anopheles darlingi ADAC003415 N
ACEP18776 Atta cephalotes ACEP18776 N
ACEP16062 Atta cephalotes ACEP16062 N
ACEP16053 Atta cephalotes ACEP16053 N
SNAPOd2T00025689001 Oikopleura dioica SNAPOd2T00025689001 N
WUBG_08150 Wuchereria bancrofti WUBG_08150 N
AEPI001840 Anopheles epiroticus AEPI001840 N
ADIR010893 Anopheles dirus ADIR010893 N
ADIR000206 Anopheles dirus ADIR000206 N
ACUA015629 Anopheles culicifacies ACUA015629 N
AATE002306 Anopheles atroparvus AATE002306 N
AARA011012 Anopheles arabiensis AARA011012 N
AALB008494 Anopheles albimanus AALB008494 N
AEPI004512 Anopheles epiroticus AEPI004512 N
Ocbimv22001570m.g Octopus bimaculoides Ocbimv22001570m.g N
Hsal_09267--XP_394607.3_APIME Harpegnathos saltator Hsal_09267--XP_394607.3_APIME N
SINV19991 Solenopsis invicta SINV19991 N
SINV17864 Solenopsis invicta SINV17864 N
SINV10896 Solenopsis invicta SINV10896 N
RPRC007267 Rhodnius prolixus RPRC007267 N
NEMVEDRAFT_v1g57075 Nematostella vectensis NEMVEDRAFT_v1g57075 N