Pvit_18941 (Pogona vitticeps)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Pvit_18941 T306919_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.989 1.000
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.989 1.000
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.989 1.000
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.989 1.000
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.989 1.000
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.989 1.000
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.989 1.000
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.989 1.000
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.989 1.000
dsf
M06431_2.00 		Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT		 B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381 		0.937 0.800
tll
M02408_2.00 		Drosophila melanogaster
NRASGTCAANNN
NNNTTGACSTYN		 PBM
Weirauch et al.(2014)
pTH5714 		0.934 0.814
tll
M03932_2.00 		Drosophila melanogaster
NRAGTCAAAAGTCA
TGACTTTTGACTYN		 SELEX
Nitta et al.(2015)
tll_1 		0.934 0.814
tll
M03933_2.00 		Drosophila melanogaster
NRAGTCAADAAGTCA
TGACTTHTTGACTYN		 SELEX
Nitta et al.(2015)
tll_2 		0.934 0.814
tll
M06558_2.00 		Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW		 B1H
Mathelier et al.(2014)
MA0459.1 		0.934 0.814
tll
M06424_2.00 		Drosophila melanogaster
AAAGTYA
TRACTTT		 B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720 		0.934 0.814
tll
M06425_2.00 		Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW		 B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720 		0.934 0.814
tll
M09688_2.00 		Drosophila melanogaster
MAAAGTCAAH
DTTGACTTTK		 Misc
Kulakovskiy et al.(2009)
tll 		0.934 0.814
tll
M11190_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TLL_Q6 		0.934 0.814
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.772 0.586
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.772 0.586
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.772 0.586
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.772 0.586
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.772 0.586
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.772 0.586
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.772 0.586
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.772 0.586
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.772 0.586
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.772 0.586
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.772 0.586
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.772 0.586
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.772 0.586
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.772 0.586
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.772 0.586
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.772 0.586
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.772 0.586
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.772 0.586
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.772 0.586
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.772 0.586
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.772 0.586
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.772 0.586
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.772 0.586
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.772 0.586
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.772 0.586
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.772 0.586
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.772 0.586
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.772 0.586
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.772 0.586
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.772 0.586
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.772 0.586
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.772 0.586
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.756 0.571
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.756 0.571
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.756 0.571
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.756 0.571
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.756 0.571
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.749 0.557
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.749 0.557
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.749 0.557
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.749 0.557
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.749 0.557
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.749 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_18941 Nuclear receptor 9 80

Links

Other Nuclear receptor family TFs
Other Pogona vitticeps TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G38300 Arabidopsis thaliana AT2G38300 D
BGIOSGA007064 Oryza indica BGIOSGA007064 I
Bo4g029640 Brassica oleracea Bo4g029640 I
Bra005124 Brassica rapa Bra005124 I
F775_03870 Aegilops tauschii F775_03870 I
F775_04777 Aegilops tauschii F775_04777 I
F775_22605 Aegilops tauschii F775_22605 I
fgenesh2_kg.4__1901__AT2G38300.1 Arabidopsis lyrata fgenesh2_kg.4__1901__AT2G38300.1 I
GLYMA01G31044 Glycine max GLYMA01G31044 I
GLYMA03G06620 Glycine max GLYMA03G06620 I
GLYMA07G18870 Glycine max GLYMA07G18870 I
GLYMA09G00685 Glycine max GLYMA09G00685 I
GLYMA15G11576 Glycine max GLYMA15G11576 I
GLYMA18G43550 Glycine max GLYMA18G43550 I
GSMUA_Achr11G01510_001 Musa acuminata GSMUA_Achr11G01510_001 I
GSMUA_Achr2G11010_001 Musa acuminata GSMUA_Achr2G11010_001 I
GSMUA_Achr7G03510_001 Musa acuminata GSMUA_Achr7G03510_001 I
GSMUA_Achr9G30700_001 Musa acuminata GSMUA_Achr9G30700_001 I
MLOC_56821 Hordeum vulgare MLOC_56821 I
MTR_2g023580 Medicago truncatula MTR_2g023580 I
MTR_7g069660 Medicago truncatula MTR_7g069660 I
OGLUM02G05030 Oryza glumaepatula OGLUM02G05030 I
OLONG_019167 Oryza longistaminata OLONG_019167 I
OMERI02G06020 Oryza meridionalis OMERI02G06020 I
ONIVA02G05430 Oryza nivara ONIVA02G05430 I
OPUNC02G04370 Oryza punctata OPUNC02G04370 I
ORGLA02G0047700 Oryza glaberrima ORGLA02G0047700 I
ORUFI02G05300 Oryza rufipogon ORUFI02G05300 I
OS02G0168200 Oryza sativa OS02G0168200 I
PGSC0003DMG400015893 Solanum tuberosum PGSC0003DMG400015893 I
PGSC0003DMG400026644 Solanum tuberosum PGSC0003DMG400026644 I
PGSC0003DMG400030032 Solanum tuberosum PGSC0003DMG400030032 I
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I
PRUPE_ppa021179mg Prunus persica PRUPE_ppa021179mg I
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I
Si039234m.g Setaria italica Si039234m.g I
Solyc02g080720.1 Solanum lycopersicum Solyc02g080720.1 I
Solyc02g080730.1 Solanum lycopersicum Solyc02g080730.1 I
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I
Solyc06g051060.2 Solanum lycopersicum Solyc06g051060.2 I
Solyc09g005030.1 Solanum lycopersicum Solyc09g005030.1 I
Solyc10g076460.1 Solanum lycopersicum Solyc10g076460.1 I
TCM_011166 Theobroma cacao TCM_011166 I
TCM_021628 Theobroma cacao TCM_021628 I
Traes_1BL_E2629CBC1 Triticum aestivum Traes_1BL_E2629CBC1 I
Traes_7AL_9A1395EC7 Triticum aestivum Traes_7AL_9A1395EC7 I
TRIUR3_34172 Triticum urartu TRIUR3_34172 I
VIT_00s1624g00010 Vitis vinifera VIT_00s1624g00010 I
VIT_01s0137g00050 Vitis vinifera VIT_01s0137g00050 I
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I
Ca_00645 Cicer arietinum Ca_00645 I
Ca_09400 Cicer arietinum Ca_09400 I
Cla017202 Citrullus lanatus Cla017202 I
Cla018361 Citrullus lanatus Cla018361 I
Pm002861 Prunus mume Pm002861 I
Pm010236 Prunus mume Pm010236 I
29780.m001368 Ricinus communis 29780.m001368 I
29842.m003572 Ricinus communis 29842.m003572 I
cassava15362.m1 Manihot esculenta cassava15362.m1 I
cassava20298.m1 Manihot esculenta cassava20298.m1 I
cassava27240.m1 Manihot esculenta cassava27240.m1 I
Cucsa.130050 Cucumis sativus Cucsa.130050 I
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I
mgf019744m Mimulus guttatus mgf019744m I
mgf023762m Mimulus guttatus mgf023762m I
Aquca_002_01368 Aquilegia coerulea Aquca_002_01368 I
Aquca_004_00431 Aquilegia coerulea Aquca_004_00431 I
Bostr.23794s0245 Boechera stricta Bostr.23794s0245 I
Cagra.4190s0017 Capsella grandiflora Cagra.4190s0017 I
Carubv10023575m.g Capsella rubella Carubv10023575m.g I
Ciclev10005466m.g Citrus clementina Ciclev10005466m.g I
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I
Eucgr.B02627 Eucalyptus grandis Eucgr.B02627 I
Eucgr.J01904 Eucalyptus grandis Eucgr.J01904 I
Eucgr.K02966 Eucalyptus grandis Eucgr.K02966 I
EuGene.0700010469 Micromonas sp RCC299 EuGene.0700010469 I
evm.TU.supercontig_120.33 Carica papaya evm.TU.supercontig_120.33 I
evm.TU.supercontig_2.82 Carica papaya evm.TU.supercontig_2.82 I
gene13487-v1.0-hybrid Fragaria vesca gene13487-v1.0-hybrid I
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I
gene21014-v1.0-hybrid Fragaria vesca gene21014-v1.0-hybrid I
Gorai.002G169300 Gossypium raimondii Gorai.002G169300 I
Gorai.002G265400 Gossypium raimondii Gorai.002G265400 I
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I
Gorai.012G117800 Gossypium raimondii Gorai.012G117800 I
Lus10001149.g Linum usitatissimum Lus10001149.g I
MDP0000133017 Malus domestica MDP0000133017 I
MDP0000196504 Malus domestica MDP0000196504 I
MDP0000214282 Malus domestica MDP0000214282 I
MDP0000234120 Malus domestica MDP0000234120 I
MDP0000272003 Malus domestica MDP0000272003 I
MDP0000321302 Malus domestica MDP0000321302 I
orange1.1g020303m.g Citrus sinensis orange1.1g020303m.g I
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I
Pavir.J33581 Panicum virgatum Pavir.J33581 I
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I
SapurV1A.0106s0010 Salix purpurea SapurV1A.0106s0010 I
SapurV1A.0203s0150 Salix purpurea SapurV1A.0203s0150 I
SapurV1A.0566s0220 Salix purpurea SapurV1A.0566s0220 I
Thhalv10016890m.g Eutrema salsugineum Thhalv10016890m.g I
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I
PK15677.1 Cannabis sativa PK15677.1 I
PK23854.1 Cannabis sativa PK23854.1 I
PK26966.1 Cannabis sativa PK26966.1 I
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I
BGIOSGA023442 Oryza indica BGIOSGA023442 N
BRADI1G32370 Brachypodium distachyon BRADI1G32370 N
F775_02595 Aegilops tauschii F775_02595 N
GRMZM2G100709 Zea mays GRMZM2G100709 N
GRMZM2G454449 Zea mays GRMZM2G454449 N
LPERR06G20200 Leersia perrieri LPERR06G20200 N
MLOC_53840 Hordeum vulgare MLOC_53840 N
MLOC_53958 Hordeum vulgare MLOC_53958 N
MLOC_67085 Hordeum vulgare MLOC_67085 N
OB06G32040 Oryza brachyantha OB06G32040 N
OBART06G24290 Oryza barthii OBART06G24290 N
OGLUM06G25550 Oryza glumaepatula OGLUM06G25550 N
OLONG_026929 Oryza longistaminata OLONG_026929 N
OMERI06G24530 Oryza meridionalis OMERI06G24530 N
ONIVA06G30620 Oryza nivara ONIVA06G30620 N
OPUNC06G22010 Oryza punctata OPUNC06G22010 N
ORGLA06G0204400 Oryza glaberrima ORGLA06G0204400 N
ORUFI06G26110 Oryza rufipogon ORUFI06G26110 N
OS06G0670300 Oryza sativa OS06G0670300 N
Sb10g026930 Sorghum bicolor Sb10g026930 N
Si007179m.g Setaria italica Si007179m.g N
Traes_7AL_BF6FD97DA Triticum aestivum Traes_7AL_BF6FD97DA N
Traes_7DL_FEA7D3672 Triticum aestivum Traes_7DL_FEA7D3672 N
TRIUR3_18893 Triticum urartu TRIUR3_18893 N
Pavir.Da00200 Panicum virgatum Pavir.Da00200 N
Pavir.Db00422 Panicum virgatum Pavir.Db00422 N