Cmyd_10000491 (Chelonia mydas)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00870 (P53) IPR011615 Cmyd_10000491 T311228_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TP53
M09337_2.00 		Homo sapiens
DRRCWTGYYCAGRCATGYYY
RRRCATGYCTGRRCAWGYYH		 Misc
Kulakovskiy et al.(2013)
P53_HUMAN.H11MO.0.A 		0.719 0.719
TP53
M09621_2.00 		Homo sapiens
NNDRCAWGYHNNDRCWWGYH
DRCWWGYHNNDRCWTGYHNN		 Misc
Heinz et al.(2010)
Saos-p53 		0.719 0.719
TP53
M11197_2.00 		Homo sapiens
RGACATGCCCGGGCATGTYC
GRACATGCCCGGGCATGTCY		 Transfac
Matys et al.(2006)
V$P53_01 		0.719 0.719
TP53
M11198_2.00 		Homo sapiens
NGRCWTGYYY
RRRCAWGYCN		 Transfac
Matys et al.(2006)
V$P53_02 		0.719 0.719
TP53
M11199_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_03 		0.719 0.719
TP53
M11200_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_04 		0.719 0.719
TP53
M11201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_05 		0.719 0.719
TP53
M11202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_Q3_01 		0.719 0.719
TP53
M11203_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_Q3 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10000491 p53 61 256

Links

Other p53 family TFs
Other Chelonia mydas TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14522 Aegilops tauschii F775_14522 N
OPUNC01G36560 Oryza punctata OPUNC01G36560 N
Si039882m.g Setaria italica Si039882m.g N
Traes_3AL_152A7186A Triticum aestivum Traes_3AL_152A7186A N
Traes_3B_934488D20 Triticum aestivum Traes_3B_934488D20 N
TRAES3BF012200010CFD_g Triticum aestivum TRAES3BF012200010CFD_g N
TRAES3BF012200030CFD_g Triticum aestivum TRAES3BF012200030CFD_g N
TRAES3BF012300030CFD_g Triticum aestivum TRAES3BF012300030CFD_g N
Pavir.Ea03785 Panicum virgatum Pavir.Ea03785 N
Pavir.J05795 Panicum virgatum Pavir.J05795 N