ENSORLG00000019389 (Oryzias latipes)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSORLG00000019389 T311759_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.928 0.928
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.920 0.920
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.704 0.704
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.704 0.704
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.704 0.704
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.704 0.704
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.704 0.704
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.704 0.704
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.704 0.704
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000024139 Paired box 34 167

Links

Other Paired box family TFs
Other Oryzias latipes TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava28523.m1 Manihot esculenta cassava28523.m1 N
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N
Carubv10023654m.g Capsella rubella Carubv10023654m.g N
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N
mgf025442m Mimulus guttatus mgf025442m N
mgf022253m Mimulus guttatus mgf022253m N
Cucsa.385700 Cucumis sativus Cucsa.385700 N
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N
Pm001154 Prunus mume Pm001154 N
Cla008847 Citrullus lanatus Cla008847 N
Ca_17453 Cicer arietinum Ca_17453 N
FIT1 Vitis vinifera VIT_06s0061g00720 N
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N
TCM_041590 Theobroma cacao TCM_041590 N
Pavir.J28741 Panicum virgatum Pavir.J28741 N
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N
PK27980.1 Cannabis sativa PK27980.1 N
PK26582.1 Cannabis sativa PK26582.1 N
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N
Pavir.J29678 Panicum virgatum Pavir.J29678 N
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N
Lus10016151.g Linum usitatissimum Lus10016151.g N
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N
MLOC_6707 Hordeum vulgare MLOC_6707 N
LPERR04G07210 Leersia perrieri LPERR04G07210 N
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N
GRMZM2G173521 Zea mays GRMZM2G173521 N
GRMZM2G107672 Zea mays GRMZM2G107672 N
GLYMA13G39650 Glycine max GLYMA13G39650 N
GLYMA12G30240 Glycine max GLYMA12G30240 N
GLYMA12G08640 Glycine max GLYMA12G08640 N
GLYMA11G19850 Glycine max GLYMA11G19850 N
MTR_2g084280 Medicago truncatula MTR_2g084280 N
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N
Bra034392 Brassica rapa Bra034392 N
Bra011972 Brassica rapa Bra011972 N
Bra000495 Brassica rapa Bra000495 N
Bo4g165090 Brassica oleracea Bo4g165090 N
Bo3g040310 Brassica oleracea Bo3g040310 N
FIT Arabidopsis thaliana AT2G28160 N
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N
Si010533m.g Setaria italica Si010533m.g N
Si010468m.g Setaria italica Si010468m.g N
Sb06g012030 Sorghum bicolor Sb06g012030 N
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N
FIT1 Populus trichocarpa POPTR_0009s01100 N
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N
OS04G0381700 Oryza sativa OS04G0381700 N
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N
OPUNC04G08160 Oryza punctata OPUNC04G08160 N
ONIVA04G07960 Oryza nivara ONIVA04G07960 N
OLONG_016577 Oryza longistaminata OLONG_016577 N
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N
OBART04G10120 Oryza barthii OBART04G10120 N
OB04G17410 Oryza brachyantha OB04G17410 N
MTR_4g057270 Medicago truncatula MTR_4g057270 N