Hsal_05017--XP_001122481.1_APIME (Harpegnathos saltator)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 Hsal_05017--XP_001122481.1_APIME T312165_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.947 0.947
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.947 0.947
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.947 0.947
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.862 0.862
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.862 0.862
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.830 0.830
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.830 0.830
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.830 0.830
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.830 0.830
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.830 0.830
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.830 0.830
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.830 0.830
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.830 0.830
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.830 0.830
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.830 0.830
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.830 0.830
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.830 0.830
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.830 0.830
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.830 0.830
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.830 0.830
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.830 0.830
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.830 0.830
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.830 0.830
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.819 0.819
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.819 0.819
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.819 0.819
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.819 0.819
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.819 0.819
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.755 0.755
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.755 0.755
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.713 0.713
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.702 0.702
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.702 0.702
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.702 0.702
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.702 0.702
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.702 0.702
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.702 0.702
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.702 0.702
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.702 0.702
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.702 0.702
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.702 0.702
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_05017--XP_001122481.1_APIME Paired box 1 95

Links

Other Paired box family TFs
Other Harpegnathos saltator TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.353040 Cucumis sativus Cucsa.353040 I 0.000
mgf017600m Mimulus guttatus mgf017600m N 0.000
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N 0.000
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N 0.000
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N 0.000
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N 0.000
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N 0.000
Carubv10023272m.g Capsella rubella Carubv10023272m.g N 0.000
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N 0.000
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N 0.000
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N 0.000
mgf019897m Mimulus guttatus mgf019897m N 0.000
gene02470-v1.0-hybrid Fragaria vesca gene02470-v1.0-hybrid N 0.000
Cucsa.338170 Cucumis sativus Cucsa.338170 N 0.000
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N 0.000
cassava40681.m1 Manihot esculenta cassava40681.m1 N 0.000
cassava19560.m1 Manihot esculenta cassava19560.m1 N 0.000
30170.m013669 Ricinus communis 30170.m013669 N 0.000
30006.m000282 Ricinus communis 30006.m000282 N 0.000
Cla022214 Citrullus lanatus Cla022214 N 0.000
Ca_07237 Cicer arietinum Ca_07237 N 0.000
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N 0.000
Pavir.Ca01410 Panicum virgatum Pavir.Ca01410 N 0.000
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N 0.000
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N 0.000
chr3.CM0452.130.nd Lotus japonicus chr3.CM0452.130.nd N 0.000
PK18855.1 Cannabis sativa PK18855.1 N 0.000
PK15670.1 Cannabis sativa PK15670.1 N 0.000
PK12273.1 Cannabis sativa PK12273.1 N 0.000
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N 0.000
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N 0.000
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N 0.000
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N 0.000
BBM Vitis vinifera VIT_04s0023g00950 N 0.000
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N 0.000
MDP0000803527 Malus domestica MDP0000803527 N 0.000
MDP0000314518 Malus domestica MDP0000314518 N 0.000
MDP0000212766 Malus domestica MDP0000212766 N 0.000
Lus10040140.g Linum usitatissimum Lus10040140.g N 0.000
Lus10039650.g Linum usitatissimum Lus10039650.g N 0.000
Lus10011730.g Linum usitatissimum Lus10011730.g N 0.000
Lus10000965.g Linum usitatissimum Lus10000965.g N 0.000
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N 0.000
GLYMA02G33090 Glycine max GLYMA02G33090 N 0.000
OB06G31060 Oryza brachyantha OB06G31060 N 0.000
OB05G22940 Oryza brachyantha OB05G22940 N 0.000
OB03G42600 Oryza brachyantha OB03G42600 N 0.000
MTR_7g091390 Medicago truncatula MTR_7g091390 N 0.000
MLOC_7325 Hordeum vulgare MLOC_7325 N 0.000
LPERR05G11930 Leersia perrieri LPERR05G11930 N 0.000
GRMZM2G146688 Zea mays GRMZM2G146688 N 0.000
GRMZM2G013657 Zea mays GRMZM2G013657 N 0.000
GLYMA19G31960 Glycine max GLYMA19G31960 N 0.000
GLYMA03G29240 Glycine max GLYMA03G29240 N 0.000
OBART05G15060 Oryza barthii OBART05G15060 N 0.000
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N 0.000
F775_10869 Aegilops tauschii F775_10869 N 0.000
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N 0.000
Bra004641 Brassica rapa Bra004641 N 0.000
Bo4g013420 Brassica oleracea Bo4g013420 N 0.000
Bo3g035770 Brassica oleracea Bo3g035770 N 0.000
BGIOSGA023402 Oryza indica BGIOSGA023402 N 0.000
BGIOSGA019793 Oryza indica BGIOSGA019793 N 0.000
AT2G41710 Arabidopsis thaliana AT2G41710 N 0.000
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N 0.000
TRIUR3_07433 Triticum urartu TRIUR3_07433 N 0.000
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N 0.000
TCM_024554 Theobroma cacao TCM_024554 N 0.000
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N 0.000
Si021952m.g Setaria italica Si021952m.g N 0.000
Sb09g019190 Sorghum bicolor Sb09g019190 N 0.000
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N 0.000
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N 0.000
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N 0.000
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N 0.000
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N 0.000
OPUNC05G13110 Oryza punctata OPUNC05G13110 N 0.000
ONIVA05G15390 Oryza nivara ONIVA05G15390 N 0.000
OMERI06G23370 Oryza meridionalis OMERI06G23370 N 0.000
OMERI05G13370 Oryza meridionalis OMERI05G13370 N 0.000
OLONG_020459 Oryza longistaminata OLONG_020459 N 0.000
OLONG_002212 Oryza longistaminata OLONG_002212 N 0.000
OGLUM06G03000 Oryza glumaepatula OGLUM06G03000 N 0.000
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N 0.000
OBART06G23380 Oryza barthii OBART06G23380 N 0.000