LCORL (Tursiops truncatus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSTTRG00000016951 T313633_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000016069 Pipsqueak 193 231
ENSTTRP00000016069 Pipsqueak 441 486

Links

Other Pipsqueak family TFs
Other Tursiops truncatus TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10019039m.g Citrus clementina Ciclev10019039m.g N 0.000
TCM_003056 Theobroma cacao TCM_003056 N 0.000
TRAES3BF066400010CFD_g Triticum aestivum TRAES3BF066400010CFD_g N 0.000
ABI3 Vitis vinifera VIT_07s0005g05400 N 0.000
Ca_21518 Cicer arietinum Ca_21518 N 0.000
Cla015213 Citrullus lanatus Cla015213 N 0.000
Pm020417 Prunus mume Pm020417 N 0.000
30204.m001803 Ricinus communis 30204.m001803 N 0.000
cassava2971.m1 Manihot esculenta cassava2971.m1 N 0.000
cassava34238.m1 Manihot esculenta cassava34238.m1 N 0.000
Cucsa.078480 Cucumis sativus Cucsa.078480 N 0.000
mgf023017m Mimulus guttatus mgf023017m N 0.000
Aquca_108_00003 Aquilegia coerulea Aquca_108_00003 N 0.000
Bostr.19424s0154 Boechera stricta Bostr.19424s0154 N 0.000
Cagra.2774s0002 Capsella grandiflora Cagra.2774s0002 N 0.000
Carubv10016094m.g Capsella rubella Carubv10016094m.g N 0.000
Solyc06g083600.1 Solanum lycopersicum Solyc06g083600.1 N 0.000
Eucgr.H00815 Eucalyptus grandis Eucgr.H00815 N 0.000
evm.TU.supercontig_8.187 Carica papaya evm.TU.supercontig_8.187 N 0.000
gene17562-v1.0-hybrid Fragaria vesca gene17562-v1.0-hybrid N 0.000
Gorai.001G184300 Gossypium raimondii Gorai.001G184300 N 0.000
Lus10011888.g Linum usitatissimum Lus10011888.g N 0.000
Lus10022820.g Linum usitatissimum Lus10022820.g N 0.000
MDP0000166580 Malus domestica MDP0000166580 N 0.000
MDP0000309680 Malus domestica MDP0000309680 N 0.000
orange1.1g038867m.g Citrus sinensis orange1.1g038867m.g N 0.000
Pavir.Ea03476 Panicum virgatum Pavir.Ea03476 N 0.000
Pavir.J03563 Panicum virgatum Pavir.J03563 N 0.000
SapurV1A.0937s0080 Salix purpurea SapurV1A.0937s0080 N 0.000
Thhalv10003110m.g Eutrema salsugineum Thhalv10003110m.g N 0.000
chr1.CM0147.220.nd Lotus japonicus chr1.CM0147.220.nd N 0.000
PDK_20s1318001g001 Phoenix dactylifera PDK_20s1318001g001 N 0.000
OBART01G41410 Oryza barthii OBART01G41410 N 0.000
ABI3 Arabidopsis thaliana AT3G24650 N 0.000
BGIOSGA000276 Oryza indica BGIOSGA000276 N 0.000
Bo3g083650 Brassica oleracea Bo3g083650 N 0.000
Bra013248 Brassica rapa Bra013248 N 0.000
BRADI2G58390 Brachypodium distachyon BRADI2G58390 N 0.000
F775_43744 Aegilops tauschii F775_43744 N 0.000
ABI3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3002399 N 0.000
GLYMA08G47240 Glycine max GLYMA08G47240 N 0.000
GRMZM2G133398 Zea mays GRMZM2G133398 N 0.000
GSMUA_Achr7G23040_001 Musa acuminata GSMUA_Achr7G23040_001 N 0.000
GSMUA_AchrUn_randomG18520_001 Musa acuminata GSMUA_AchrUn_randomG18520_001 N 0.000
LPERR01G35880 Leersia perrieri LPERR01G35880 N 0.000
MLOC_69727 Hordeum vulgare MLOC_69727 N 0.000
MTR_7g059330 Medicago truncatula MTR_7g059330 N 0.000
OB01G50120 Oryza brachyantha OB01G50120 N 0.000
AMTR_s00049p00034730 Amborella trichopoda AMTR_s00049p00034730 N 0.000
OGLUM01G45580 Oryza glumaepatula OGLUM01G45580 N 0.000
OLONG_001180 Oryza longistaminata OLONG_001180 N 0.000
OMERI01G38380 Oryza meridionalis OMERI01G38380 N 0.000
ONIVA01G46510 Oryza nivara ONIVA01G46510 N 0.000
ORGLA01G0353400 Oryza glaberrima ORGLA01G0353400 N 0.000
ORUFI01G44750 Oryza rufipogon ORUFI01G44750 N 0.000
VP1 Oryza sativa OS01G0911700 N 0.000
PGSC0003DMG400020088 Solanum tuberosum PGSC0003DMG400020088 N 0.000
PGSC0003DMG400020155 Solanum tuberosum PGSC0003DMG400020155 N 0.000
POPTR_0002s25330 Populus trichocarpa POPTR_0002s25330 N 0.000
PRUPE_ppa001608mg Prunus persica PRUPE_ppa001608mg N 0.000
Sb03g043480 Sorghum bicolor Sb03g043480 N 0.000
Si000497m.g Setaria italica Si000497m.g N 0.000
Solyc06g083590.2 Solanum lycopersicum Solyc06g083590.2 N 0.000