GM13162 (Drosophila sechellia)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 FBgn0168093 T313702_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
rib
M03950_2.00 		Drosophila melanogaster
YNKTGCRAWT
AWTYGCAMNR		 SELEX
Nitta et al.(2015)
rib_1 		1.000 1.000
rib
M06439_2.00 		Drosophila melanogaster
YGCRAAAWW
WWTTTYGCR		 B1H
Zhu et al.(2011)
rib_SANGER_5_FBgn0003254 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0194639 Pipsqueak 280 324

Links

Other Pipsqueak family TFs
Other Drosophila sechellia TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
ASU_08570 Ascaris suum ASU_08570 I
BTMF_0000942101 Brugia timori BTMF_0000942101 I
DME_0000409101 Dracunculus medinensis DME_0000409101 I
ECANG7_00782 Echinococcus canadensis ECANG7_00782 I
EmuJ_000893400 Echinococcus multilocularis EmuJ_000893400 I
EVEC_0000230001 Enterobius vermicularis EVEC_0000230001 I
GPUH_0002149301 Gongylonema pulchrum GPUH_0002149301 I
GPUH_0002623401 Gongylonema pulchrum GPUH_0002623401 I
HDID_0000526701 Hymenolepis diminuta HDID_0000526701 I
HmN_000026900 Hymenolepis microstoma HmN_000026900 I
HNAJ_0000459401 Hymenolepis nana HNAJ_0000459401 I
nAv.1.0.1.g00979 Acanthocheilonema viteae nAv.1.0.1.g00979 I
ACYPI007984 Acyrthosiphon pisum ACYPI007984 I
nDi.2.2.2.g04365 Dirofilaria immitis nDi.2.2.2.g04365 I
nLs.2.1.2.g04119 Litomosoides sigmodontis nLs.2.1.2.g04119 I
nOo.2.0.1.g11302 Onchocerca ochengi nOo.2.0.1.g11302 I
PTRK_0001409600 Parastrongyloides trichosuri PTRK_0001409600 I
RSKR_0000926700 Rhabditophanes kr3021 RSKR_0000926700 I
SMUV_0000762601 Syphacia muris SMUV_0000762601 I
SPAL_0000266700 Strongyloides papillosus SPAL_0000266700 I
SVE_1899900 Strongyloides venezuelensis SVE_1899900 I
TASK_0000487901 Taenia asiatica TASK_0000487901 I
TCNE_0001440901 Toxocara canis TCNE_0001440901 I
TsM_000653100 Taenia solium TsM_000653100 I
TTAC_0000691201 Hydatigera taeniaeformis TTAC_0000691201 I
ENSXMAG00000016280 Xiphophorus maculatus ENSXMAG00000016280 I
WUBG_01190 Wuchereria bancrofti WUBG_01190 I
Bm5383 Brugia malayi Bm5383 I
DAPPUDRAFT_300607 Daphnia pulex DAPPUDRAFT_300607 I
ENSCING00000022875 Ciona intestinalis ENSCING00000022875 I
ENSCSAVG00000002875 Ciona savignyi ENSCSAVG00000002875 I
smad9 Danio rerio ENSDARG00000021938 I
smad5 Gasterosteus aculeatus ENSGACG00000018718 I
smad9 Gasterosteus aculeatus ENSGACG00000020562 I
ENSLOCG00000008478 Lepisosteus oculatus ENSLOCG00000008478 I
smad5 Oryzias latipes ENSORLG00000009395 I
ENSPFOG00000005752 Poecilia formosa ENSPFOG00000005752 I
smad5 Tetraodon nigroviridis ENSTNIG00000003701 I
smad5 Takifugu rubripes ENSTRUG00000001329 I
ASIM_0002076001 Anisakis simplex ASIM_0002076001 I
HelroG186716 Helobdella robusta HelroG186716 I
WBGene00246233 Onchocerca volvulus WBGene00246233 I
HHAL000023-PA Halyomorpha halys HHAL000023-PA I
SMU15039699 Schmidtea mediterranea SMU15039699 I
smad1 Xenopus tropicalis XB-GENE-1018193 I
smad1.L Xenopus laevis XB-GENE-1018199 I
smad1.S Xenopus laevis XB-GENE-6253892 I
BGLB011859 Biomphalaria glabrata BGLB011859 I
ALUE_0002104001 Ascaris lumbricoides ALUE_0002104001 I
HPLM_0002015601 Haemonchus placei HPLM_0002015601 N
LOAG_07723 Loa loa LOAG_07723 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
scaffold778-EXSNAP2012.5 Pristionchus exspectatus scaffold778-EXSNAP2012.5 N
DICVIV_05604 Dictyocaulus viviparus DICVIV_05604 N