rib (Drosophila melanogaster)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 FBgn0003254 T313652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
rib
M03950_2.00		 Drosophila melanogaster
YNKTGCRAWT
AWTYGCAMNR		 SELEX
Nitta et al.(2015)
rib_1		 (Direct) (Direct)
rib
M06439_2.00		 Drosophila melanogaster
YGCRAAAWW
WWTTTYGCR		 B1H
Zhu et al.(2011)
rib_SANGER_5_FBgn0003254		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0085700 Pipsqueak 373 417
FBpp0303090 Pipsqueak 373 417
FBpp0303091 Pipsqueak 373 417

Links

Other Pipsqueak family TFs
Other Drosophila melanogaster TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GA20197 Drosophila pseudoobscura FBgn0080192 I 1.000
GF11582 Drosophila ananassae FBgn0088622 I 1.000
GG21956 Drosophila erecta FBgn0114134 I 1.000
GL17640 Drosophila persimilis FBgn0155243 I 1.000
GM13162 Drosophila sechellia FBgn0168093 I 1.000
GD11439 Drosophila simulans FBgn0183188 I 1.000
GK20672 Drosophila willistoni FBgn0222668 I 1.000
GE12030 Drosophila yakuba FBgn0229805 I 1.000
GH23095 Drosophila grimshawi FBgn0130552 I 0.955
GI18921 Drosophila mojavensis FBgn0141660 I 0.955
GJ19776 Drosophila virilis FBgn0206918 I 0.955
LCUP014583 Lucilia cuprina LCUP014583 I 0.818