Ogr00836 (Ophisaurus gracilis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Ogr00836 T314459_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		0.988 0.988
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr00836 Pipsqueak 31 69
Ogr00836 Pipsqueak 280 325

Links

Other Pipsqueak family TFs
Other Ophisaurus gracilis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK27109.1 Cannabis sativa PK27109.1 D 0.000
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I 0.000
Si026605m.g Setaria italica Si026605m.g I 0.000
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I 0.000
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I 0.000
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I 0.000
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I 0.000
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I 0.000
TRIUR3_12877 Triticum urartu TRIUR3_12877 I 0.000
TRIUR3_31416 Triticum urartu TRIUR3_31416 I 0.000
VIP1 Vitis vinifera VIT_18s0076g00330 I 0.000
Cla014037 Citrullus lanatus Cla014037 I 0.000
Cla015261 Citrullus lanatus Cla015261 I 0.000
Cucsa.363640 Cucumis sativus Cucsa.363640 I 0.000
mgf003343m Mimulus guttatus mgf003343m I 0.000
Si010549m.g Setaria italica Si010549m.g I 0.000
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I 0.000
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I 0.000
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I 0.000
Lus10029773.g Linum usitatissimum Lus10029773.g I 0.000
Lus10042802.g Linum usitatissimum Lus10042802.g I 0.000
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I 0.000
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I 0.000
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I 0.000
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I 0.000
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I 0.000
PDK_20s1522421g002 Phoenix dactylifera PDK_20s1522421g002 I 0.000
LPERR11G03390 Leersia perrieri LPERR11G03390 I 0.000
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I 0.000
BGIOSGA037037 Oryza indica BGIOSGA037037 I 0.000
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I 0.000
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I 0.000
F775_08606 Aegilops tauschii F775_08606 I 0.000
GRMZM2G079365 Zea mays GRMZM2G079365 I 0.000
GRMZM5G821024 Zea mays GRMZM5G821024 I 0.000
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I 0.000
LPERR12G03530 Leersia perrieri LPERR12G03530 I 0.000
MLOC_71198 Hordeum vulgare MLOC_71198 I 0.000
OB11G13300 Oryza brachyantha OB11G13300 I 0.000
OB12G13750 Oryza brachyantha OB12G13750 I 0.000
OBART11G03920 Oryza barthii OBART11G03920 I 0.000
OBART12G03760 Oryza barthii OBART12G03760 I 0.000
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I 0.000
OLONG_001598 Oryza longistaminata OLONG_001598 I 0.000
OMERI12G02030 Oryza meridionalis OMERI12G02030 I 0.000
ONIVA11G04030 Oryza nivara ONIVA11G04030 I 0.000
ONIVA12G03450 Oryza nivara ONIVA12G03450 I 0.000
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I 0.000
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I 0.000
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I 0.000
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I 0.000
OS12G0162500 Oryza sativa OS12G0162500 I 0.000
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I 0.000
Sb05g003810 Sorghum bicolor Sb05g003810 I 0.000
Sb08g003940 Sorghum bicolor Sb08g003940 I 0.000