genemark-nMf.1.1.scaf00700-processed-gene-0.2 (Meloidogyne floridensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 genemark-nMf.1.1.scaf00700-processed-gene-0.2 T315039_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf00700-processed-gene-0.2-mRNA-1 Pipsqueak 404 446
genemark-nMf.1.1.scaf00700-processed-gene-0.2-mRNA-1 Pipsqueak 636 679

Links

Other Pipsqueak family TFs
Other Meloidogyne floridensis TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
foxd3.S Xenopus laevis XB-GENE-6252892 I
Afo_R012285 Aptenodytes forsteri Afo_R012285 I
Alligator_sinensis_CCG000944.1 Alligator sinensis Alligator_sinensis_CCG000944.1 I
Brh_R002183 Buceros rhinoceros Brh_R002183 I
Gfo_R007083 Geospiza fortis Gfo_R007083 I
Tal_R011333 Tyto alba Tal_R011333 I
estExt_fgenesh2_kg.C_2440002 Branchiostoma floridae estExt_fgenesh2_kg.C_2440002 I
fgenesh2_pm.scaffold_42000007 Branchiostoma floridae fgenesh2_pm.scaffold_42000007 I
Ocbimv22021452m.g Octopus bimaculoides Ocbimv22021452m.g I
Sakowv30008279m.g Saccoglossus kowalevskii Sakowv30008279m.g I
CAC12963 Xenopus laevis CAC12963 I
SMU15000028 Schmidtea mediterranea SMU15000028 I
foxe1 Xenopus tropicalis XB-GENE-478544 I
Aan_R009899 Calypte anna Aan_R009899 I
foxe1.L Xenopus laevis XB-GENE-865189 I
foxd2.S Xenopus laevis XB-GENE-865311 I
foxd3.L Xenopus laevis XB-GENE-865691 I
foxd1.L Xenopus laevis XB-GENE-865762 I
BGLB006516 Biomphalaria glabrata BGLB006516 I
BGLB012621 Biomphalaria glabrata BGLB012621 I
ECANG7_00391 Echinococcus canadensis ECANG7_00391 I
EmuJ_000628700 Echinococcus multilocularis EmuJ_000628700 I
nRc.2.0.1.g21816 Romanomermis culicivorax nRc.2.0.1.g21816 I
TASK_0000473201 Taenia asiatica TASK_0000473201 I
TsM_000900700 Taenia solium TsM_000900700 I
TTAC_0000791201 Hydatigera taeniaeformis TTAC_0000791201 I
unc-130 Caenorhabditis elegans WBGene00006853 I
CapteG199610 Capitella teleta CapteG199610 I
CBG02936 Caenorhabditis briggsae CBG02936 I
CBN23382 Caenorhabditis brenneri CBN23382 I
CJA16219 Caenorhabditis japonica CJA16219 I
CRE02153 Caenorhabditis remanei CRE02153 I
DAPPUDRAFT_8599 Daphnia pulex DAPPUDRAFT_8599 I
ENSAPLG00000007505 Anas platyrhynchos ENSAPLG00000007505 I
foxd-a/b Ciona intestinalis ENSCING00000023594 I
ENSFALG00000013960 Ficedula albicollis ENSFALG00000013960 I
foxd3 Gasterosteus aculeatus ENSGACG00000006933 I
ENSGACG00000011599 Gasterosteus aculeatus ENSGACG00000011599 I
ENSGALG00000024294 Gallus gallus ENSGALG00000024294 I
ENSLACG00000008269 Latimeria chalumnae ENSLACG00000008269 I
ENSMGAG00000001726 Meleagris gallopavo ENSMGAG00000001726 I
ENSOANG00000007002 Ornithorhynchus anatinus ENSOANG00000007002 I
ENSPSIG00000004256 Pelodiscus sinensis ENSPSIG00000004256 I
ENSTGUG00000008530 Taeniopygia guttata ENSTGUG00000008530 I
LotgiG137594 Lottia gigantea LotgiG137594 I
LotgiG99760 Lottia gigantea LotgiG99760 I
SMAR004878 Strigamia maritima SMAR004878 I
SPU_014418 Strongylocentrotus purpuratus SPU_014418 I
SPU_027648 Strongylocentrotus purpuratus SPU_027648 I
Aqu1.221488 Amphimedon queenslandica Aqu1.221488 I
Sakowv30020443m.g Saccoglossus kowalevskii Sakowv30020443m.g N
NEMVEDRAFT_v1g110212 Nematostella vectensis NEMVEDRAFT_v1g110212 N
CapteG131123 Capitella teleta CapteG131123 N