genemark-nMf.1.1.scaf00700-processed-gene-0.2 (Meloidogyne floridensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 genemark-nMf.1.1.scaf00700-processed-gene-0.2 T315039_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf00700-processed-gene-0.2-mRNA-1 Pipsqueak 404 446
genemark-nMf.1.1.scaf00700-processed-gene-0.2-mRNA-1 Pipsqueak 636 679

Links

Other Pipsqueak family TFs
Other Meloidogyne floridensis TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MhA1_Contig775.frz3.gene10 Meloidogyne hapla MhA1_Contig775.frz3.gene10 N 0.965
TCLT_0000738501 Thelazia callipaeda TCLT_0000738501 N 0.894
ASU_08146 Ascaris suum ASU_08146 N 0.882
Bm5461 Brugia malayi Bm5461 N 0.859
WBGene00242326 Onchocerca volvulus WBGene00242326 N 0.859
EEL_0001032101 Elaeophora elaphi EEL_0001032101 N 0.859
nDi.2.2.2.g04953 Dirofilaria immitis nDi.2.2.2.g04953 N 0.859
nOo.2.0.1.g02662 Onchocerca ochengi nOo.2.0.1.g02662 N 0.859
nLs.2.1.2.g07513 Litomosoides sigmodontis nLs.2.1.2.g07513 N 0.847
LOAG_18975 Loa loa LOAG_18975 N 0.835
L892_g27509 Steinernema scapterisci L892_g27509 N 0.835
scaffold10-EXSNAP2012.60 Pristionchus exspectatus scaffold10-EXSNAP2012.60 N 0.835
DME_0000703101 Dracunculus medinensis DME_0000703101 N 0.828
ANCCAN_11119 Ancylostoma caninum ANCCAN_11119 N 0.824
BXY_1526500 Bursaphelenchus xylophilus BXY_1526500 N 0.824
EVEC_0000343001 Enterobius vermicularis EVEC_0000343001 N 0.824
HCOI01126400 Haemonchus contortus HCOI01126400 N 0.824
HPLM_0001514901 Haemonchus placei HPLM_0001514901 N 0.824
CJA11562 Caenorhabditis japonica CJA11562 N 0.812
L596_g5367 Steinernema carpocapsae L596_g5367 N 0.812
maker-nMf.1.1.scaf00051-snap-gene-0.15 Meloidogyne floridensis maker-nMf.1.1.scaf00051-snap-gene-0.15 N 0.812
PTRK_0000738400 Parastrongyloides trichosuri PTRK_0000738400 N 0.812
L898_g31322 Steinernema monticolum L898_g31322 N 0.807
SPAL_0001308000 Strongyloides papillosus SPAL_0001308000 N 0.805
CBN10229 Caenorhabditis brenneri CBN10229 N 0.800
CRE07418 Caenorhabditis remanei CRE07418 N 0.800
L889_g3580 Steinernema feltiae L889_g3580 N 0.800
L893_g31084 Steinernema glaseri L893_g31084 N 0.800
SMUV_0000352701 Syphacia muris SMUV_0000352701 N 0.800
SSTP_0000853200 Strongyloides stercoralis SSTP_0000853200 N 0.800
SVE_0358800 Strongyloides venezuelensis SVE_0358800 N 0.800
CBG04528 Caenorhabditis briggsae CBG04528 N 0.788