CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Aan_R012729 *(Calypte anna)* Rel
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00554 (RHD_DNA_bind)	IPR011539	Aan_R012729	T317719_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Nfkb1 M09358_2.00	Mus musculus	GGGRNTTYCCC	GGGRAANYCCC	Misc Kulakovskiy et al.(2013) NFKB1_MOUSE.H11MO.0.A	0.923	0.923
NFKB1 M03448_2.00	Homo sapiens	MGGGGAWTCCCCT	AGGGGAWTCCCCK	SELEX Jolma et al.(2013) NFKB1_1	0.905	0.905
NFKB1 M05887_2.00	Homo sapiens	NGGKRNTYYCCCN	NGGGRRANYMCCN	SMiLE-seq Isakova et al.(2017) NFKB1	0.905	0.905
NFKB1 M09348_2.00	Homo sapiens	HYTTCCCY	RGGGAARD	Misc Kulakovskiy et al.(2013) NFKB1_HUMAN.H11MO.0.A	0.905	0.905
NFKB1 M11228_2.00	Homo sapiens	GGGGATYCCC	GGGRATCCCC	Transfac Matys et al.(2006) V$NFKAPPAB50_01	0.905	0.905
NFKB1 M11229_2.00	Homo sapiens	NGGGAHTYYCCM	KGGRRADTCCCN	Transfac Matys et al.(2006) V$NFKB_C	0.905	0.905
NFKB1 M11230_2.00	Homo sapiens	DKGGGAMTTYCCNN	NNGGRAAKTCCCMH	Transfac Matys et al.(2006) V$NFKB_Q6	0.905	0.905
NFKB1 M11231_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$P50_Q6	0.905	0.905
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Aan_R012729	Rel	52	250	LQIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVGKFCEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLESRMIDACKKGYNPGLLVHPELAYLQADGCGDRQLTEREREIIHQAAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVISDAIYDS

Links
Other Rel family TFs
Other *Calypte anna* TFs