rfx3 (Oryzias latipes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSORLG00000007747 T318422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.779 0.987
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.779 0.987
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.779 0.987
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.779 0.987
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.779 0.987
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.779 0.987
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.779 0.987
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.779 0.987
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.779 0.987
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.775 0.949
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.775 0.949
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.775 0.949
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.775 0.949
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.775 0.949
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.775 0.949
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.773 0.936
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.773 0.936
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.773 0.936
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.773 0.936
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.768 0.949
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.768 0.949
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.768 0.949
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.764 0.910
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.764 0.910
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.762 0.859
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.762 0.859
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.762 0.859
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.762 0.859
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.762 0.859
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.762 0.859
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.762 0.859
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.762 0.859
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.762 0.859
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.762 0.859
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.762 0.859
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.760 0.859
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.757 0.808
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.756 0.808
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.755 0.795
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.751 0.795
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.751 0.795
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.751 0.795
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.751 0.795
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.751 0.795
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.742 0.821
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.729 0.667
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.704 0.654
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.704 0.654
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.704 0.654
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.704 0.654
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.704 0.654
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.704 0.654
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.684 0.615
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.651 0.410
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.651 0.410
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.651 0.410
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.651 0.410
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.651 0.410
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000009706 RFX 178 255

Links

Other RFX family TFs
Other Oryzias latipes TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fd102C Drosophila melanogaster FBgn0039937 D
CpipJ_CPIJ009525 Culex pipiens CpipJ_CPIJ009525 I
WUBG_10187 Wuchereria bancrofti WUBG_10187 I
AAEL000236 Aedes aegypti AAEL000236 I
ACEP16720 Atta cephalotes ACEP16720 I
ACYPI002885 Acyrthosiphon pisum ACYPI002885 I
AGAP000069 Anopheles gambiae AGAP000069 I
BGIBMGA001488 Bombyx mori BGIBMGA001488 I
CapteG111555 Capitella teleta CapteG111555 I
CapteG82802 Capitella teleta CapteG82802 I
CBG12232 Caenorhabditis briggsae CBG12232 I
CBN31271 Caenorhabditis brenneri CBN31271 I
CGI_10003726 Crassostrea gigas CGI_10003726 I
CPIJ009525 Culex quinquefasciatus CPIJ009525 I
CRE23967 Caenorhabditis remanei CRE23967 I
DAPPUDRAFT_50302 Daphnia pulex DAPPUDRAFT_50302 I
ENSLOCG00000005947 Lepisosteus oculatus ENSLOCG00000005947 I
GA10799 Drosophila pseudoobscura FBgn0070855 I
GF10343 Drosophila ananassae FBgn0087384 I
GG16435 Drosophila erecta FBgn0108666 I
GH24005 Drosophila grimshawi FBgn0131461 I
GI14084 Drosophila mojavensis FBgn0136838 I
GL15611 Drosophila persimilis FBgn0153215 I
GM26767 Drosophila sechellia FBgn0181620 I
GJ15974 Drosophila virilis FBgn0203160 I
GK13662 Drosophila willistoni FBgn0215670 I
GE14501 Drosophila yakuba FBgn0232105 I
GB50374 Apis mellifera GB50374 I
HelroG146879 Helobdella robusta HelroG146879 I
HelroG84905 Helobdella robusta HelroG84905 I
HMEL012130 Heliconius melpomene HMEL012130 I
ISCW003951 Ixodes scapularis ISCW003951 I
KGM_06490 Danaus plexippus KGM_06490 I
LotgiG79770 Lottia gigantea LotgiG79770 I
LotgiG79781 Lottia gigantea LotgiG79781 I
MESCA005623 Megaselia scalaris MESCA005623 I
NEMVEDRAFT_v1g125256 Nematostella vectensis NEMVEDRAFT_v1g125256 I
NEMVEDRAFT_v1g39596 Nematostella vectensis NEMVEDRAFT_v1g39596 I
NEMVEDRAFT_v1g59063 Nematostella vectensis NEMVEDRAFT_v1g59063 I
NV18839 Nasonia vitripennis NV18839 I
PHUM244390 Pediculus humanus PHUM244390 I
RPRC002475 Rhodnius prolixus RPRC002475 I
SINV17382 Solenopsis invicta SINV17382 I
SMAR012448 Strigamia maritima SMAR012448 I
TC004761 Tribolium castaneum TC004761 I
tetur01g09690 Tetranychus urticae tetur01g09690 I
fkh-10 Caenorhabditis elegans WBGene00001442 I
WBGene00238063 Onchocerca volvulus WBGene00238063 I
YQE_09099 Dendroctonus ponderosae YQE_09099 I
Cflo_07366--XP_001121752.1_APIME Camponotus floridanus Cflo_07366--XP_001121752.1_APIME I
Hsal_00505--XP_001121752.1_APIME Harpegnathos saltator Hsal_00505--XP_001121752.1_APIME I
e_gw.6.414.1 Branchiostoma floridae e_gw.6.414.1 I
estExt_fgenesh2_kg.C_80001 Branchiostoma floridae estExt_fgenesh2_kg.C_80001 I
estExt_fgenesh2_pg.C_1200108 Branchiostoma floridae estExt_fgenesh2_pg.C_1200108 I
Ocbimv22038677m.g Octopus bimaculoides Ocbimv22038677m.g I
Sakowv30023329m.g Saccoglossus kowalevskii Sakowv30023329m.g I
CLEC001579 Cimex lectularius CLEC001579 I
LCUP005975 Lucilia cuprina LCUP005975 I
LDEC001528 Leptinotarsa decemlineata LDEC001528 I
SMU15004452 Schmidtea mediterranea SMU15004452 I
XP_002159677.1 Hydra magnipapillata XP_002159677.1 I
AALB006646 Anopheles albimanus AALB006646 I
AARA001108 Anopheles arabiensis AARA001108 I
AATE003062 Anopheles atroparvus AATE003062 I
ACHR005020 Anopheles christyi ACHR005020 I
ACUA020854 Anopheles culicifacies ACUA020854 I
ADIR000975 Anopheles dirus ADIR000975 I
AEPI005796 Anopheles epiroticus AEPI005796 I
AFAF018179 Anopheles farauti AFAF018179 I
AFUN011568 Anopheles funestus AFUN011568 I
AMAM011474 Anopheles maculatus AMAM011474 I
AMEC012184 Anopheles melas AMEC012184 I
AMEM007373 Anopheles merus AMEM007373 I
AMIN002134 Anopheles minimus AMIN002134 I
AQUA008315 Anopheles quadriannulatus AQUA008315 I
ASIS005525 Anopheles sinensis ASIS005525 I
ASTEI06209 Anopheles stephensi ASTEI06209 I
BGLB003447 Biomphalaria glabrata BGLB003447 I
LLOJ007413 Lutzomyia longipalpis LLOJ007413 I
PPAI000826 Phlebotomus papatasi PPAI000826 I
ACAC_0000772401 Angiostrongylus cantonensis ACAC_0000772401 I
ACOC_0000013301 Angiostrongylus costaricensis ACOC_0000013301 I
ANCCAN_30535 Ancylostoma caninum ANCCAN_30535 I
ANCCEY_07256 Ancylostoma ceylanicum ANCCEY_07256 I
ASU_00906 Ascaris suum ASU_00906 I
BTMF_0001614201 Brugia timori BTMF_0001614201 I
BXY_1193200 Bursaphelenchus xylophilus BXY_1193200 I
CGOC_0000329701 Cylicostephanus goldi CGOC_0000329701 I
D915_07563 Fasciola hepatica D915_07563 I
D918_04073 Trichuris suis D918_04073 I
DICVIV_08747 Dictyocaulus viviparus DICVIV_08747 I
DME_0000296101 Dracunculus medinensis DME_0000296101 I
ECANG7_08418 Echinococcus canadensis ECANG7_08418 I
EEL_0000313101 Elaeophora elaphi EEL_0000313101 I
GPUH_0002128801 Gongylonema pulchrum GPUH_0002128801 I
HCOI02176800 Haemonchus contortus HCOI02176800 I
HDID_0000955901 Hymenolepis diminuta HDID_0000955901 I
HmN_000125600 Hymenolepis microstoma HmN_000125600 I
HNAJ_0000218001 Hymenolepis nana HNAJ_0000218001 I
HPBE_0001940301 Heligmosomoides bakeri HPBE_0001940301 I
HPLM_0001940801 Haemonchus placei HPLM_0001940801 I
L596_g8980 Steinernema carpocapsae L596_g8980 I
L889_g23699 Steinernema feltiae L889_g23699 I
L892_g5229 Steinernema scapterisci L892_g5229 I
L893_g32272 Steinernema glaseri L893_g32272 I
L898_g16488 Steinernema monticolum L898_g16488 I
NBR_0000095001 Nippostrongylus brasiliensis NBR_0000095001 I
nDi.2.2.2.g05283 Dirofilaria immitis nDi.2.2.2.g05283 I
NECAME_04384 Necator americanus NECAME_04384 I
nOo.2.0.1.g07936 Onchocerca ochengi nOo.2.0.1.g07936 I
OESDEN_02306 Oesophagostomum dentatum OESDEN_02306 I
SBAD_0000682701 Soboliphyme baturini SBAD_0000682701 I
SVUK_0000095001 Strongylus vulgaris SVUK_0000095001 I
TCLT_0000158601 Thelazia callipaeda TCLT_0000158601 I
TCNE_0000717001 Toxocara canis TCNE_0000717001 I
TMUE_s0045003300 Trichuris muris TMUE_s0045003300 I
TTAC_0000212301 Hydatigera taeniaeformis TTAC_0000212301 I
TTRE_0000002201 Trichuris trichiura TTRE_0000002201 I
CJA06474 Caenorhabditis japonica CJA06474 N
foxq2 Danio rerio ENSDARG00000071394 N
ENSLACG00000010819 Latimeria chalumnae ENSLACG00000010819 N
ENSONIG00000004794 Oreochromis niloticus ENSONIG00000004794 N
foxq2 Oryzias latipes ENSORLG00000004973 N
ENSPFOG00000001440 Poecilia formosa ENSPFOG00000001440 N
ENSXMAG00000012768 Xiphophorus maculatus ENSXMAG00000012768 N
Alligator_sinensis_CCG003246.1 Alligator sinensis Alligator_sinensis_CCG003246.1 N
Ogr12164 Ophisaurus gracilis Ogr12164 N
Pvit_09831 Pogona vitticeps Pvit_09831 N
C_00890 Schistosoma haematobium C_00890 N
MCOS_0000398701 Mesocestoides corti MCOS_0000398701 N
SMRZ_0001178901 Schistosoma margrebowiei SMRZ_0001178901 N