ENSPSIG00000018073 (Pelodiscus sinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPSIG00000018073 T318471_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.744 0.763
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.744 0.763
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.744 0.763
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.744 0.763
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.744 0.763
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.744 0.763
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.744 0.763
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.744 0.763
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.744 0.763
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.744 0.763
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.744 0.763
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.744 0.763
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.744 0.763
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.744 0.763
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.744 0.763
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.632
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.632
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.632
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.632
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000020414 RFX 91 166

Links

Other RFX family TFs
Other Pelodiscus sinensis TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU04663 Neurospora crassa NCU04663 D
FOXG_14277 Fusarium oxysporum FOXG_14277 I
H101_07435 Trichophyton interdigitale H101_07435 I
FPSE_00499 Fusarium pseudograminearum FPSE_00499 I
FVEG_02723 Fusarium verticillioides FVEG_02723 I
GSTUM_00005598001 Tuber melanosporum GSTUM_00005598001 I
HCBG_04625 Histoplasma capsulatum HCBG_04625 I
MBM_05016 Marssonina brunnea MBM_05016 I
MCYG_00297 Arthroderma otae MCYG_00297 I
MGG_09263 Magnaporthe oryzae MGG_09263 I
MGYG_00861 Microsporum gypseum MGYG_00861 I
NechaG40581 Fusarium solani NechaG40581 I
OIDMADRAFT_112327 Oidiodendron maius OIDMADRAFT_112327 I
PAAG_08490 Paracoccidioides sp lutzii PAAG_08490 I
PABG_04642 Paracoccidioides brasiliensis PABG_04642 I
PDE_04102 Penicillium oxalicum PDE_04102 I
PDIP_85460 Penicillium digitatum PDIP_85460 I
PEX1_083360 Penicillium expansum PEX1_083360 I
PFICI_07122 Pestalotiopsis fici PFICI_07122 I
PITC_041810 Penicillium italicum PITC_041810 I
PV07_06437 Cladophialophora immunda PV07_06437 I
PVAR5_8925 Byssochlamys spectabilis PVAR5_8925 I
SBOR_3621 Sclerotinia borealis SBOR_3621 I
SMAC_08342 Sordaria macrospora SMAC_08342 I
SS1G_05371 Sclerotinia sclerotiorum SS1G_05371 I
TEQG_02692 Trichophyton equinum TEQG_02692 I
TESG_02247 Trichophyton tonsurans TESG_02247 I
THITE_40970 Thielavia terrestris THITE_40970 I
U727_0043004001 Penicillium solitum U727_0043004001 I
e_gw1.5.1042.1 Nectria haematococca e_gw1.5.1042.1 I
estExt_fgenesh3_pm.C_140174 Neurospora discreta estExt_fgenesh3_pm.C_140174 I
BGHDH14_bgh01821 Blumeria graminis BGHDH14_bgh01821 I
MCYG_00297 Microsporum canis MCYG_00297 I
A1O3_03291 Capronia epimyces A1O3_03291 I
A1O9_03542 Exophiala aquamarina A1O9_03542 I
A1O9_13001 Exophiala aquamarina A1O9_13001 I
AUEXF2481DRAFT_25614 Aureobasidium subglaciale AUEXF2481DRAFT_25614 I
BBA_08191 Beauveria bassiana BBA_08191 I
Bcin09g02560 Botrytis cinerea Bcin09g02560 I
BDDG_04796 Blastomyces dermatitidis BDDG_04796 I
FOXG_05408 Fusarium oxysporum FOXG_05408 I
ACLA_079920 Aspergillus clavatus CADACLAG00007683 I
AFUA_2G08040 Aspergillus fumigatus CADAFUAG00004446 I
ANIA_05849 Aspergillus nidulans CADANIAG00007192 I
CADAORAG00005589 Aspergillus oryzae CADAORAG00005589 I
NFIA_024310 Neosartorya fischeri CADNFIAG00002261 I
CCM_00913 Cordyceps militaris CCM_00913 I
FGRRES_17309 Fusarium graminearum FGRRES_17309 I
FFUJ_07449 Fusarium fujikuroi FFUJ_07449 I
EV44_g6283 Erysiphe necator EV44_g6283 I
EURHEDRAFT_513914 Aspergillus ruber EURHEDRAFT_513914 I
DRE_04286 Drechslerella stenobrocha DRE_04286 I
NFIA_083690 Neosartorya fischeri CADNFIAG00006940 I
CHGG_00505 Chaetomium globosum CHGG_00505 I
CTHT_0050850 Chaetomium thermophilum CTHT_0050850 I
Cob_02185 Colletotrichum orbiculare Cob_02185 I
AOL_s00083g362 Arthrobotrys oligospora AOL_s00083g362 N
A1O1_08282 Capronia coronata A1O1_08282 N
Z519_00024 Cladophialophora bantiana Z519_00024 N
Z517_10110 Fonsecaea pedrosoi Z517_10110 N
UREG_00865 Uncinocarpus reesii UREG_00865 N
A1O5_00025 Cladophialophora psammophila A1O5_00025 N
A1O7_03671 Cladophialophora yegresii A1O7_03671 N
G647_04707 Cladophialophora carrionii G647_04707 N
CIMG_00917 Coccidioides immitis CIMG_00917 N
CPC735_054240 Coccidioides posadasii CPC735_054240 N
HMPREF1120_05352 Exophiala dermatitidis HMPREF1120_05352 N
PV11_00815 Exophiala sideris PV11_00815 N
PV10_05308 Exophiala mesophila PV10_05308 N
PV08_04106 Exophiala spinifera PV08_04106 N
M438DRAFT_351239 Aureobasidium pullulans M438DRAFT_351239 N
PV06_00266 Exophiala oligosperma PV06_00266 N
PV04_03866 Capronia semiimmersa PV04_03866 N