rfx5 (Tetraodon nigroviridis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTNIG00000005388 T318534_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.743 0.772
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.743 0.772
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.743 0.772
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.743 0.772
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.743 0.772
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.743 0.772
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.743 0.772
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.743 0.772
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.743 0.772
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.743 0.772
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.743 0.772
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.743 0.772
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.743 0.772
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.743 0.772
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.743 0.772
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.718 0.646
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.718 0.646
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.718 0.646
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.718 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000008071 RFX 72 150

Links

Other RFX family TFs
Other Tetraodon nigroviridis TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.scaffold_503000011 Branchiostoma floridae fgenesh2_pg.scaffold_503000011 I
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.670
HMEL011744 Heliconius melpomene HMEL011744 I 0.682
KGM_16732 Danaus plexippus KGM_16732 I 0.681
MCINX003210 Melitaea cinxia MCINX003210 I 0.681
Cmyd_10012613 Chelonia mydas Cmyd_10012613 N
ARID2 Pteropus vampyrus ENSPVAG00000009834 N
ARID2 Sorex araneus ENSSARG00000007415 N
ENSSSCG00000030685 Sus scrofa ENSSSCG00000030685 N
ARID2 Vicugna pacos ENSVPAG00000004779 N
ENSXMAG00000006636 Xiphophorus maculatus ENSXMAG00000006636 N
Alligator_sinensis_CCG004973.1 Alligator sinensis Alligator_sinensis_CCG004973.1 N
ENSPANG00000015334 Papio anubis ENSPANG00000015334 N
ENSMMUP00000020998 Macaca fascicularis ENSMMUP00000020998 N
ENSP00000335044-D1 Bos grunniens ENSP00000335044-D1 N
Hsal_11764--XP_001120115.1_APIME Harpegnathos saltator Hsal_11764--XP_001120115.1_APIME N
Myotis_brandtii_ARID2_10029493 Myotis brandtii Myotis_brandtii_ARID2_10029493 N
Tal_R007164 Tyto alba Tal_R007164 N
Sakowv30024145m.g Saccoglossus kowalevskii Sakowv30024145m.g N
ARID2 Equus caballus ENSECAG00000019032 N
ARID2 Felis catus ENSFCAG00000012831 N
ARID2 Homo sapiens ENSG00000189079 N
ARID2 Oryctolagus cuniculus ENSOCUG00000013306 N
ARID2 Otolemur garnettii ENSOGAG00000024418 N
ACEP25962 Atta cephalotes ACEP25962 N
ARID2 Bos taurus ENSBTAG00000011087 N
ENSCSAG00000006749 Chlorocebus sabaeus ENSCSAG00000006749 N
ARID2 Dasypus novemcinctus ENSDNOG00000014939 N
ARID2 Canis familiaris ENSCAFG00000009335 N
ENSLACG00000005013 Latimeria chalumnae ENSLACG00000005013 N
ARID2 Loxodonta africana ENSLAFG00000004415 N
ARID2 Microcebus murinus ENSMICG00000001487 N
ARID2 Myotis lucifugus ENSMLUG00000006908 N
ARID2 Macaca mulatta ENSMMUG00000015962 N
ARID2 Monodelphis domestica ENSMODG00000018527 N
ENSOANG00000010834 Ornithorhynchus anatinus ENSOANG00000010834 N