LotgiG138119 (Lottia gigantea)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 LotgiG138119 T318675_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.702 0.608
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.702 0.608
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.702 0.608
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.702 0.608
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.687 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.687 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.687 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.687 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.687 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.687 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.687 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.687 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.687 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.687 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.687 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.687 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.687 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.687 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.687 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP138119 RFX 43 121

Links

Other RFX family TFs
Other Lottia gigantea TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_07513 Aspergillus nidulans CADANIAG00000615 D
NCU03905 Neurospora crassa NCU03905 D
CIMG_01382 Coccidioides immitis CIMG_01382 I
MCYG_04996 Microsporum canis MCYG_04996 I
SNOG_06296 Stagonospora nodorum SNOG_06296 I
VDBG_08090 Verticillium albo atrum VDBG_08090 I
A1O1_03859 Capronia coronata A1O1_03859 I
A1O3_06529 Capronia epimyces A1O3_06529 I
A1O5_07259 Cladophialophora psammophila A1O5_07259 I
A1O7_09850 Cladophialophora yegresii A1O7_09850 I
A1O9_09618 Exophiala aquamarina A1O9_09618 I
ACRE_028290 Acremonium chrysogenum ACRE_028290 I
AOL_s00215g64 Arthrobotrys oligospora AOL_s00215g64 I
ARB_05352 Arthroderma benhamiae ARB_05352 I
AUEXF2481DRAFT_35799 Aureobasidium subglaciale AUEXF2481DRAFT_35799 I
BBA_03650 Beauveria bassiana BBA_03650 I
BBA_06721 Beauveria bassiana BBA_06721 I
Bcin13g03000 Botrytis cinerea Bcin13g03000 I
BGHDH14_bgh00909 Blumeria graminis BGHDH14_bgh00909 I
ACLA_082980 Aspergillus clavatus CADACLAG00007994 I
CADAFLAG00009992 Aspergillus flavus CADAFLAG00009992 I
AFUA_6G09930 Aspergillus fumigatus CADAFUAG00001764 I
CADANGAG00009121 Aspergillus niger CADANGAG00009121 I
CADAORAG00000572 Aspergillus oryzae CADAORAG00000572 I
ATEG_06717 Aspergillus terreus CADATEAG00007654 I
NFIA_055660 Neosartorya fischeri CADNFIAG00004667 I
CCM_09377 Cordyceps militaris CCM_09377 I
CFIO01_11339 Colletotrichum fioriniae CFIO01_11339 I
CGGC5_5165 Colletotrichum gloeosporioides CGGC5_5165 I
CHGG_06554 Chaetomium globosum CHGG_06554 I
CMQ_2600 Grosmannia clavigera CMQ_2600 I
Cob_11788 Colletotrichum orbiculare Cob_11788 I
COCC4DRAFT_173684 Bipolaris maydis COCC4DRAFT_173684 I
COCCADRAFT_4209 Bipolaris zeicola COCCADRAFT_4209 I
COCMIDRAFT_100501 Bipolaris oryzae COCMIDRAFT_100501 I
COCSADRAFT_250469 Bipolaris sorokiniana COCSADRAFT_250469 I
COCVIDRAFT_105819 Bipolaris victoriae COCVIDRAFT_105819 I
CPC735_050410 Coccidioides posadasii CPC735_050410 I
CPUR_01989 Claviceps purpurea CPUR_01989 I
CSUB01_01966 Colletotrichum sublineola CSUB01_01966 I
CTHT_0012120 Chaetomium thermophilum CTHT_0012120 I
CTHT_0041340 Chaetomium thermophilum CTHT_0041340 I
DRE_03900 Drechslerella stenobrocha DRE_03900 I
EPUS_04235 Endocarpon pusillum EPUS_04235 I
EURHEDRAFT_405475 Aspergillus ruber EURHEDRAFT_405475 I
F503_05471 Ophiostoma piceae uamh F503_05471 I
FFUJ_06219 Fusarium fujikuroi FFUJ_06219 I
FFUJ_06324 Fusarium fujikuroi FFUJ_06324 I
FGRRES_08800 Fusarium graminearum FGRRES_08800 I
FOXG_02993 Fusarium oxysporum FOXG_02993 I
FPSE_11967 Fusarium pseudograminearum FPSE_11967 I
FVEG_01844 Fusarium verticillioides FVEG_01844 I
FVEG_01956 Fusarium verticillioides FVEG_01956 I
G647_08434 Cladophialophora carrionii G647_08434 I
GGTG_00856 Gaeumannomyces graminis GGTG_00856 I
GGTG_04663 Gaeumannomyces graminis GGTG_04663 I
GLRG_05388 Colletotrichum graminicola GLRG_05388 I
GMDG_08493 Pseudogymnoascus destructans GMDG_08493 I
GSTUM_00000600001 Tuber melanosporum GSTUM_00000600001 I
H072_4550 Dactylellina haptotyla H072_4550 I
H101_02345 Trichophyton interdigitale H101_02345 I
H102_05196 Trichophyton rubrum H102_05196 I
H105_05218 Trichophyton soudanense H105_05218 I
HCBG_05924 Histoplasma capsulatum HCBG_05924 I
HMPREF1120_08988 Exophiala dermatitidis HMPREF1120_08988 I
HMPREF1624_00195 Sporothrix schenckii HMPREF1624_00195 I
LEMA_P070240.1 Leptosphaeria maculans LEMA_P070240.1 I
M437DRAFT_88117 Aureobasidium melanogenum M437DRAFT_88117 I
M438DRAFT_337469 Aureobasidium pullulans M438DRAFT_337469 I
M7I_5161 Glarea lozoyensis M7I_5161 I
MAC_00870 Metarhizium acridum MAC_00870 I
MAC_03525 Metarhizium acridum MAC_03525 I
MAJ_00150 Metarhizium majus MAJ_00150 I
MAJ_03937 Metarhizium majus MAJ_03937 I
MAM_00786 Metarhizium album MAM_00786 I
MAM_03270 Metarhizium album MAM_03270 I
MANI_016891 Metarhizium anisopliae MANI_016891 I
MANI_028570 Metarhizium anisopliae MANI_028570 I
MAPG_07612 Magnaporthe poae MAPG_07612 I
MBM_06431 Marssonina brunnea MBM_06431 I
MBR_02489 Metarhizium brunneum MBR_02489 I
MBR_08061 Metarhizium brunneum MBR_08061 I
MCYG_04996 Arthroderma otae MCYG_04996 I
MGG_02632 Magnaporthe oryzae MGG_02632 I
MGG_12814 Magnaporthe oryzae MGG_12814 I
MGU_00524 Metarhizium guizhouense MGU_00524 I
MGU_03543 Metarhizium guizhouense MGU_03543 I
MGYG_07857 Microsporum gypseum MGYG_07857 I
MPH_11343 Macrophomina phaseolina MPH_11343 I
MYCFIDRAFT_201498 Pseudocercospora fijiensis MYCFIDRAFT_201498 I
MYCTH_2298160 Myceliophthora thermophila MYCTH_2298160 I
MYCTH_2306522 Myceliophthora thermophila MYCTH_2306522 I
NechaG67451 Fusarium solani NechaG67451 I
NechaG99622 Fusarium solani NechaG99622 I
NEUTE1DRAFT_88066 Neurospora tetrasperma NEUTE1DRAFT_88066 I
OCS_00262 Ophiocordyceps sinensis OCS_00262 I
OIDMADRAFT_198759 Oidiodendron maius OIDMADRAFT_198759 I
PAAG_01282 Paracoccidioides sp lutzii PAAG_01282 I
PABG_01850 Paracoccidioides brasiliensis PABG_01850 I
PCH_Pc20g15280 Penicillium rubens PCH_Pc20g15280 I
PDE_03264 Penicillium oxalicum PDE_03264 I
PEX1_003570 Penicillium expansum PEX1_003570 I
PFICI_10263 Pestalotiopsis fici PFICI_10263 I
PITC_017070 Penicillium italicum PITC_017070 I
PMAA_063050 Talaromyces marneffei PMAA_063050 I
PODANS_1_20350 Podospora anserina PODANS_1_20350 I
PODANS_4_8790 Podospora anserina PODANS_4_8790 I
PTRG_01651 Pyrenophora triticirepentis PTRG_01651 I
PTT_06950 Pyrenophora teres PTT_06950 I
PV04_10908 Capronia semiimmersa PV04_10908 I
PV05_03710 Exophiala xenobiotica PV05_03710 I
PV06_06768 Exophiala oligosperma PV06_06768 I
PV07_08431 Cladophialophora immunda PV07_08431 I
PV08_07641 Exophiala spinifera PV08_07641 I
PV09_04486 Verruconis gallopava PV09_04486 I
PV10_06508 Exophiala mesophila PV10_06508 I
PV11_05605 Exophiala sideris PV11_05605 I
PVAR5_6135 Byssochlamys spectabilis PVAR5_6135 I
S40285_06845 Stachybotrys chlorohalonata S40285_06845 I
S40285_07743 Stachybotrys chlorohalonata S40285_07743 I
S40288_03027 Stachybotrys chartarum S40288_03027 I
S40288_03446 Stachybotrys chartarum S40288_03446 I
SBOR_9706 Sclerotinia borealis SBOR_9706 I
SEPMUDRAFT_145560 Sphaerulina musiva SEPMUDRAFT_145560 I
SETTUDRAFT_18242 Setosphaeria turcica SETTUDRAFT_18242 I
SMAC_06328 Sordaria macrospora SMAC_06328 I
SPBR_06880 Sporothrix brasiliensis SPBR_06880 I
SS1G_09561 Sclerotinia sclerotiorum SS1G_09561 I
TEQG_02725 Trichophyton equinum TEQG_02725 I
TESG_06643 Trichophyton tonsurans TESG_06643 I
THITE_2109887 Thielavia terrestris THITE_2109887 I
THITE_2111586 Thielavia terrestris THITE_2111586 I
TRIATDRAFT_164087 Trichoderma atroviride TRIATDRAFT_164087 I
TRIATDRAFT_300980 Trichoderma atroviride TRIATDRAFT_300980 I
TRIREDRAFT_49854 Trichoderma reesei TRIREDRAFT_49854 I
TRIREDRAFT_74576 Trichoderma reesei TRIREDRAFT_74576 I
TRIVIDRAFT_115051 Trichoderma virens TRIVIDRAFT_115051 I
TRIVIDRAFT_150786 Trichoderma virens TRIVIDRAFT_150786 I
TRV_04392 Trichophyton verrucosum TRV_04392 I
TSTA_082530 Talaromyces stipitatus TSTA_082530 I
U727_0043143031 Penicillium solitum U727_0043143031 I
UCREL1_8518 Eutypa lata UCREL1_8518 I
UCRNP2_9367 Neofusicoccum parvum UCRNP2_9367 I
UCRPA7_4629 Togninia minima UCRPA7_4629 I
UREG_01309 Uncinocarpus reesii UREG_01309 I
UV8b_489 Ustilaginoidea virens UV8b_489 I
VDAG_01588 Verticillium dahliae VDAG_01588 I
VDBG_08090 Verticillium alfalfae VDBG_08090 I
VHEMI06877 Torrubiella hemipterigena VHEMI06877 I
VHEMI07796 Torrubiella hemipterigena VHEMI07796 I
W97_07866 Coniosporium apollinis W97_07866 I
X797_000525 Metarhizium robertsii X797_000525 I
X797_006365 Metarhizium robertsii X797_006365 I
YALI0_F03388g Yarrowia lipolytica YALI0_F03388g I
Z517_08992 Fonsecaea pedrosoi Z517_08992 I
Z518_07428 Rhinocladiella mackenziei Z518_07428 I
Z519_05838 Cladophialophora bantiana Z519_05838 I
e_gw1.1.3908.1 Mycosphaerella fijiensis e_gw1.1.3908.1 I
estExt_fgenesh1_pg.C_sca_2_chr3_3_00460 Nectria haematococca estExt_fgenesh1_pg.C_sca_2_chr3_3_00460 I
estExt_fgenesh3_pm.C_60520 Neurospora discreta estExt_fgenesh3_pm.C_60520 I
estExt_Genewise1Plus.C_130082 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_130082 I
estExt_Genewise1Plus.C_sca_2_chr3_3_01039 Nectria haematococca estExt_Genewise1Plus.C_sca_2_chr3_3_01039 I
AB04817.1 Alternaria brassicicola AB04817.1 I
estExt_Genewise1Plus.C_90094 Cryphonectria parasitica estExt_Genewise1Plus.C_90094 I
fgenesh1_pm.00118_#_216 Aspergillus carbonarius fgenesh1_pm.00118_#_216 I
Pc20g15280 Penicillium chrysogenum Pc20g15280 I
PMAA_063050 Penicillium marneffei PMAA_063050 I
e_gw1.8.371.1 Sporobolomyces roseus e_gw1.8.371.1 N