LotgiG138119 (Lottia gigantea)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 LotgiG138119 T318675_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.702 0.608
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.702 0.608
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.702 0.608
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.702 0.608
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.687 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.687 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.687 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.687 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.687 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.687 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.687 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.687 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.687 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.687 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.687 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.687 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.687 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.687 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.687 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP138119 RFX 43 121

Links

Other RFX family TFs
Other Lottia gigantea TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.737
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.727
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.726
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.726
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.726
TsM_000553100 Taenia solium TsM_000553100 I 0.726
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.725
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.725
A_01977 Schistosoma haematobium A_01977 I 0.724
Smp_040350 Schistosoma mansoni Smp_040350 I 0.724
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.721
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.717
T265_11740 Opisthorchis viverrini T265_11740 I 0.715
csin102559 Clonorchis sinensis csin102559 I 0.715
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.714
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.713
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.713
rfx7 Danio rerio ENSDARG00000077237 I 0.712
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.709
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.709
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.709
RFX7 Oryzias latipes ENSORLG00000005342 I 0.709
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.709
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.709
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.709
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.709
RFX7 Danio rerio ENSDARG00000103691 I 0.708
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.708
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.708
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.708
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.706
CapteG131555 Capitella teleta CapteG131555 I 0.704
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.703
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.703
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.703
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.703
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.703
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.702
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.702
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.702
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.702
Rfx7 Mus musculus ENSMUSG00000037674 D 0.702
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.702
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.702
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.702
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.702
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.702
RFX7 Procavia capensis ENSPCAG00000004974 I 0.702
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.702
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.702
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.702
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.702
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.702
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.702
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.702
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.702
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.702
RFX7 Homo sapiens ENSG00000181827 D 0.702
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.702
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.702
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.702
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.702
RFX7 Canis familiaris ENSCAFG00000016029 I 0.702
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.702
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.702
RFX7 Bos taurus ENSBTAG00000000565 I 0.702
rfx7 Oryzias latipes ENSORLG00000008583 I 0.701
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.699
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.699
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.699
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.698
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.697
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.697
RFX7 Equus caballus ENSECAG00000002379 I 0.697
RFX7 Sorex araneus ENSSARG00000010801 I 0.697
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.697
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.697
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.697
RFX7 Felis catus ENSFCAG00000029408 I 0.697
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.697
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.697
Aan_R011989 Calypte anna Aan_R011989 I 0.697
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.697
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.696
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.695
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.695
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.695
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.695
GB49419 Apis mellifera GB49419 I 0.694
SINV24627 Solenopsis invicta SINV24627 I 0.694
L798_03377 Zootermopsis nevadensis L798_03377 I 0.694
PHUM035280 Pediculus humanus PHUM035280 I 0.694
ACEP24602 Atta cephalotes ACEP24602 I 0.694
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.694
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.693
NV23037 Nasonia vitripennis NV23037 I 0.693
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.692
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.692
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.692
ISCW001129 Ixodes scapularis ISCW001129 I 0.692
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.692
TC008959 Tribolium castaneum TC008959 I 0.692
LCUP014592 Lucilia cuprina LCUP014592 I 0.692
AAEL013752 Aedes aegypti AAEL013752 I 0.691
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.691
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.691
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.691
HMEL011744 Heliconius melpomene HMEL011744 I 0.691
AGAP013226 Anopheles gambiae AGAP013226 I 0.690
ADAC008404 Anopheles darlingi ADAC008404 I 0.690
AMIN003942 Anopheles minimus AMIN003942 I 0.690
GH18082 Drosophila grimshawi FBgn0125550 I 0.690
AMEM009524 Anopheles merus AMEM009524 I 0.690
AMEC002251 Anopheles melas AMEC002251 I 0.690
MCINX003210 Melitaea cinxia MCINX003210 I 0.690
AFUN011072 Anopheles funestus AFUN011072 I 0.690
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.690
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.690
ACOM036649 Anopheles coluzzii ACOM036649 I 0.690
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.690
ACHR008891 Anopheles christyi ACHR008891 I 0.690
AATE016751 Anopheles atroparvus AATE016751 I 0.690
AALB008384 Anopheles albimanus AALB008384 I 0.690
AARA004226 Anopheles arabiensis AARA004226 I 0.690
ACUA017169 Anopheles culicifacies ACUA017169 I 0.690
ADIR010232 Anopheles dirus ADIR010232 I 0.690
ASIS020285 Anopheles sinensis ASIS020285 I 0.690
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.690
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.690
AEPI006624 Anopheles epiroticus AEPI006624 I 0.690
GE24099 Drosophila yakuba FBgn0241238 I 0.689
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.689
MDOA009335 Musca domestica MDOA009335 I 0.689
AFAF011654 Anopheles farauti AFAF011654 I 0.689
GK13786 Drosophila willistoni FBgn0215794 I 0.689
GL22063 Drosophila persimilis FBgn0159655 I 0.689
GF16654 Drosophila ananassae FBgn0093675 I 0.689
CG9727 Drosophila melanogaster FBgn0037445 I 0.689
GJ22650 Drosophila virilis FBgn0209754 I 0.689
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.689
GG10435 Drosophila erecta FBgn0102744 I 0.689
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.689
GM10553 Drosophila sechellia FBgn0165499 I 0.689
GI24583 Drosophila mojavensis FBgn0147305 I 0.689
GD19544 Drosophila simulans FBgn0191039 I 0.689
KGM_16732 Danaus plexippus KGM_16732 I 0.688
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.688
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.688
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.688
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.688
rfx5 Danio rerio ENSDARG00000063258 I 0.688
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.687
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.687
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.687
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.687
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.687
RFX5 Equus caballus ENSECAG00000024774 I 0.687
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.687
RFX7 Echinops telfairi ENSETEG00000015037 I 0.687
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.687
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.687
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.687
RFX5 Echinops telfairi ENSETEG00000013503 I 0.687
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.687
RFX5 Felis catus ENSFCAG00000005568 I 0.687
RFX5 Sorex araneus ENSSARG00000000750 I 0.687
RFX5 Homo sapiens ENSG00000143390 D 0.687
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.687
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.687
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.687
RFX5 Bos taurus ENSBTAG00000017580 I 0.687
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.687
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.687
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.687
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.687
RFX5 Sus scrofa ENSSSCG00000006625 I 0.687
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.687
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.687
RFX5 Canis familiaris ENSCAFG00000012661 I 0.687
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.687
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.687
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.687
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.687
Rfx5 Mus musculus ENSMUSG00000005774 I 0.686
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.686
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.686
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.684
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.683
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.683
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.683
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.682
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.682
CLEC011984 Cimex lectularius CLEC011984 I 0.682
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.682
RFX5 Gallus gallus ENSGALG00000000836 I 0.681
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.680
RFX5 Procavia capensis ENSPCAG00000011056 I 0.679
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.678
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.677
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.677
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.677
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.677
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.676
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.673
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.672
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.671
D915_00887 Fasciola hepatica D915_00887 I 0.671
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.670
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.669
Aan_R010941 Calypte anna Aan_R010941 I 0.664
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.659
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.656
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.655
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.654
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.654
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.651
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.650