ENSXMAG00000003651 (Xiphophorus maculatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSXMAG00000003651 T318570_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.761 0.848
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.761 0.848
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.761 0.848
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.761 0.848
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.690 0.532
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.690 0.532
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.690 0.532
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.690 0.532
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.690 0.532
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.690 0.532
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.690 0.532
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.690 0.532
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.690 0.532
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.690 0.532
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.690 0.532
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.690 0.532
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.690 0.532
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.690 0.532
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.690 0.532
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000003671 RFX 118 196

Links

Other RFX family TFs
Other Xiphophorus maculatus TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
rfx7 Oryzias latipes ENSORLG00000008583 I 0.789
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.788
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.784
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.779
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.778
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.775
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.774
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.768
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.767
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.766
RFX7 Danio rerio ENSDARG00000103691 I 0.766
rfx7 Danio rerio ENSDARG00000077237 I 0.762
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.762
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.762
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.762
RFX7 Oryzias latipes ENSORLG00000005342 I 0.762
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.762
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.761
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.761
RFX7 Bos taurus ENSBTAG00000000565 I 0.761
RFX7 Canis familiaris ENSCAFG00000016029 I 0.761
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.761
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.761
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.761
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.761
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.761
RFX7 Homo sapiens ENSG00000181827 D 0.761
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.761
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.761
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.761
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.761
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.761
Rfx7 Mus musculus ENSMUSG00000037674 D 0.761
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.761
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.761
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.761
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.761
RFX7 Procavia capensis ENSPCAG00000004974 I 0.761
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.761
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.761
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.761
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.761
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.761
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.761
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.761
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.760
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.760
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.759
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.758
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.758
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.758
RFX7 Equus caballus ENSECAG00000002379 I 0.756
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.756
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.756
Aan_R011989 Calypte anna Aan_R011989 I 0.756
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.756
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.756
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.756
RFX7 Felis catus ENSFCAG00000029408 I 0.755
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.755
RFX7 Sorex araneus ENSSARG00000010801 I 0.755
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.755
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.753
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.753
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.753
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.750
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.749
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.748
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.748
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.748
RFX7 Echinops telfairi ENSETEG00000015037 I 0.741
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.720
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.710
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.708
csin102559 Clonorchis sinensis csin102559 I 0.706
T265_11740 Opisthorchis viverrini T265_11740 I 0.706
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.704
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.703
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.703
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.703
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.703
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.703
rfx5 Danio rerio ENSDARG00000063258 I 0.702
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.702
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.701
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.701
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.701
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.701
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.701
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.700
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.700
Smp_040350 Schistosoma mansoni Smp_040350 I 0.700
A_01977 Schistosoma haematobium A_01977 I 0.700
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.699
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.699
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.699
TsM_000553100 Taenia solium TsM_000553100 I 0.699
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.699
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.698
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.698
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.698
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.697
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.697
RFX5 Gallus gallus ENSGALG00000000836 I 0.695
LotgiG138119 Lottia gigantea LotgiG138119 I 0.695
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.695
NV23037 Nasonia vitripennis NV23037 I 0.694
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.694
CapteG131555 Capitella teleta CapteG131555 I 0.693
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.693
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.692
ACEP24602 Atta cephalotes ACEP24602 I 0.691
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.691
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.691
GB49419 Apis mellifera GB49419 I 0.691
SINV24627 Solenopsis invicta SINV24627 I 0.691
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.691
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.691
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.691
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.691
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.691
RFX5 Bos taurus ENSBTAG00000017580 I 0.690
RFX5 Canis familiaris ENSCAFG00000012661 I 0.690
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.690
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.690
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.690
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.690
RFX5 Equus caballus ENSECAG00000024774 I 0.690
RFX5 Echinops telfairi ENSETEG00000013503 I 0.690
RFX5 Felis catus ENSFCAG00000005568 I 0.690
RFX5 Homo sapiens ENSG00000143390 D 0.690
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.690
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.690
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.690
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.690
Rfx5 Mus musculus ENSMUSG00000005774 I 0.690
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.690
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.690
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.690
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.690
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.690
RFX5 Procavia capensis ENSPCAG00000011056 I 0.690
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.690
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.690
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.690
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.690
RFX5 Sorex araneus ENSSARG00000000750 I 0.690
RFX5 Sus scrofa ENSSSCG00000006625 I 0.690
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.690
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.690
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.690
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.690
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.690
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.689
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.688
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.687
L798_03377 Zootermopsis nevadensis L798_03377 I 0.687
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.686
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.685
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.685
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.685
TC008959 Tribolium castaneum TC008959 I 0.684
PHUM035280 Pediculus humanus PHUM035280 I 0.683
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.683
HMEL011744 Heliconius melpomene HMEL011744 I 0.682
MCINX003210 Melitaea cinxia MCINX003210 I 0.682
ADAC008404 Anopheles darlingi ADAC008404 I 0.681
AGAP013226 Anopheles gambiae AGAP013226 I 0.681
KGM_16732 Danaus plexippus KGM_16732 I 0.681
AALB008384 Anopheles albimanus AALB008384 I 0.681
AARA004226 Anopheles arabiensis AARA004226 I 0.681
AATE016751 Anopheles atroparvus AATE016751 I 0.681
ACHR008891 Anopheles christyi ACHR008891 I 0.681
ACOM036649 Anopheles coluzzii ACOM036649 I 0.681
ACUA017169 Anopheles culicifacies ACUA017169 I 0.681
ADIR010232 Anopheles dirus ADIR010232 I 0.681
AEPI006624 Anopheles epiroticus AEPI006624 I 0.681
AFUN011072 Anopheles funestus AFUN011072 I 0.681
AMEC002251 Anopheles melas AMEC002251 I 0.681
AMEM009524 Anopheles merus AMEM009524 I 0.681
AMIN003942 Anopheles minimus AMIN003942 I 0.681
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.681
ASIS020285 Anopheles sinensis ASIS020285 I 0.681
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.681
MDOA009335 Musca domestica MDOA009335 I 0.681
AAEL013752 Aedes aegypti AAEL013752 I 0.680
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.680
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.679
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.679
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.678
GH18082 Drosophila grimshawi FBgn0125550 I 0.678
Aan_R010941 Calypte anna Aan_R010941 I 0.678
CLEC011984 Cimex lectularius CLEC011984 I 0.678
LCUP014592 Lucilia cuprina LCUP014592 I 0.678
AFAF011654 Anopheles farauti AFAF011654 I 0.678
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.677
ISCW001129 Ixodes scapularis ISCW001129 I 0.677
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.676
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.676
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.675
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.675
CG9727 Drosophila melanogaster FBgn0037445 I 0.674
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.674
GF16654 Drosophila ananassae FBgn0093675 I 0.674
GG10435 Drosophila erecta FBgn0102744 I 0.674
GI24583 Drosophila mojavensis FBgn0147305 I 0.674
GL22063 Drosophila persimilis FBgn0159655 I 0.674
GM10553 Drosophila sechellia FBgn0165499 I 0.674
GD19544 Drosophila simulans FBgn0191039 I 0.674
GJ22650 Drosophila virilis FBgn0209754 I 0.674
GK13786 Drosophila willistoni FBgn0215794 I 0.674
GE24099 Drosophila yakuba FBgn0241238 I 0.674
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.673
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.672
RFX7 Sus scrofa ENSSSCG00000004603 I 0.672
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.671
Tal_R011248 Tyto alba Tal_R011248 I 0.670
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.669
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.669
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.668
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.663
RFX7 Microcebus murinus ENSMICG00000000614 I 0.663
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.659
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.658
D915_00887 Fasciola hepatica D915_00887 I 0.657
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.657
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.656
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.655
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.651
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.651
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.651