csin102559 (Clonorchis sinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 csin102559 T319165_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.718 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.718 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.718 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.718 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.711 0.532
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.711 0.532
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.711 0.532
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.711 0.532
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.711 0.532
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.711 0.532
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.711 0.532
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.711 0.532
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.711 0.532
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.711 0.532
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.711 0.532
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.711 0.532
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.711 0.532
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.711 0.532
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.711 0.532
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin102559 RFX 117 195

Links

Other RFX family TFs
Other Clonorchis sinensis TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
T265_11740 Opisthorchis viverrini T265_11740 I 0.797
Smp_040350 Schistosoma mansoni Smp_040350 I 0.786
A_01977 Schistosoma haematobium A_01977 I 0.786
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.776
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.776
TsM_000553100 Taenia solium TsM_000553100 I 0.776
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.776
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.772
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.772
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.765
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.765
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.762
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.733
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.727
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.724
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.724
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.724
RFX7 Oryzias latipes ENSORLG00000005342 I 0.724
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.724
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.723
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.723
rfx7 Danio rerio ENSDARG00000077237 I 0.723
RFX7 Danio rerio ENSDARG00000103691 I 0.723
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.723
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.722
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.718
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.718
RFX7 Bos taurus ENSBTAG00000000565 I 0.718
RFX7 Canis familiaris ENSCAFG00000016029 I 0.718
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.718
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.718
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.718
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.718
RFX7 Homo sapiens ENSG00000181827 D 0.718
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.718
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.718
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.718
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.718
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.718
Rfx7 Mus musculus ENSMUSG00000037674 D 0.718
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.718
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.718
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.718
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.718
RFX7 Procavia capensis ENSPCAG00000004974 I 0.718
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.718
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.718
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.718
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.718
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.718
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.718
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.718
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.718
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.717
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.717
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.717
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.717
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.715
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.715
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.715
LotgiG138119 Lottia gigantea LotgiG138119 I 0.715
RFX7 Equus caballus ENSECAG00000002379 I 0.714
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.714
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.714
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.714
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.714
Aan_R011989 Calypte anna Aan_R011989 I 0.714
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.714
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.714
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.714
CapteG131555 Capitella teleta CapteG131555 I 0.713
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.713
RFX7 Sorex araneus ENSSARG00000010801 I 0.713
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.713
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.713
RFX7 Felis catus ENSFCAG00000029408 I 0.712
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.712
rfx7 Oryzias latipes ENSORLG00000008583 I 0.712
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.712
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.712
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.712
RFX5 Bos taurus ENSBTAG00000017580 I 0.711
RFX5 Canis familiaris ENSCAFG00000012661 I 0.711
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.711
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.711
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.711
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.711
RFX5 Equus caballus ENSECAG00000024774 I 0.711
RFX5 Echinops telfairi ENSETEG00000013503 I 0.711
RFX5 Felis catus ENSFCAG00000005568 I 0.711
RFX5 Homo sapiens ENSG00000143390 D 0.711
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.711
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.711
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.711
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.711
Rfx5 Mus musculus ENSMUSG00000005774 I 0.711
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.711
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.711
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.711
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.711
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.711
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.711
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.711
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.711
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.711
RFX5 Sorex araneus ENSSARG00000000750 I 0.711
RFX5 Sus scrofa ENSSSCG00000006625 I 0.711
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.711
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.711
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.711
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.711
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.710
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.710
NV23037 Nasonia vitripennis NV23037 I 0.710
ACEP24602 Atta cephalotes ACEP24602 I 0.709
rfx5 Danio rerio ENSDARG00000063258 I 0.709
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.709
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.709
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.709
GB49419 Apis mellifera GB49419 I 0.709
SINV24627 Solenopsis invicta SINV24627 I 0.709
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.709
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.709
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.708
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.708
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.708
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.708
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.708
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.707
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.707
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.707
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.707
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.706
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.706
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.706
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.706
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.706
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.705
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.705
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.705
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.704
RFX7 Echinops telfairi ENSETEG00000015037 I 0.704
RFX5 Gallus gallus ENSGALG00000000836 I 0.704
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.704
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.704
L798_03377 Zootermopsis nevadensis L798_03377 I 0.703
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.702
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.702
RFX5 Procavia capensis ENSPCAG00000011056 I 0.702
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.702
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.702
HMEL011744 Heliconius melpomene HMEL011744 I 0.701
MCINX003210 Melitaea cinxia MCINX003210 I 0.701
KGM_16732 Danaus plexippus KGM_16732 I 0.700
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.700
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.700
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.700
ADAC008404 Anopheles darlingi ADAC008404 I 0.699
AGAP013226 Anopheles gambiae AGAP013226 I 0.699
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.699
AALB008384 Anopheles albimanus AALB008384 I 0.699
AARA004226 Anopheles arabiensis AARA004226 I 0.699
AATE016751 Anopheles atroparvus AATE016751 I 0.699
ACHR008891 Anopheles christyi ACHR008891 I 0.699
ACOM036649 Anopheles coluzzii ACOM036649 I 0.699
ACUA017169 Anopheles culicifacies ACUA017169 I 0.699
ADIR010232 Anopheles dirus ADIR010232 I 0.699
AEPI006624 Anopheles epiroticus AEPI006624 I 0.699
AFUN011072 Anopheles funestus AFUN011072 I 0.699
AMEC002251 Anopheles melas AMEC002251 I 0.699
AMEM009524 Anopheles merus AMEM009524 I 0.699
AMIN003942 Anopheles minimus AMIN003942 I 0.699
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.699
ASIS020285 Anopheles sinensis ASIS020285 I 0.699
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.699
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.698
AFAF011654 Anopheles farauti AFAF011654 I 0.698
MDOA009335 Musca domestica MDOA009335 I 0.698
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.697
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.697
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.696
AAEL013752 Aedes aegypti AAEL013752 I 0.696
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.696
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.696
GH18082 Drosophila grimshawi FBgn0125550 I 0.696
LCUP014592 Lucilia cuprina LCUP014592 I 0.696
CG9727 Drosophila melanogaster FBgn0037445 I 0.695
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.695
GF16654 Drosophila ananassae FBgn0093675 I 0.695
GG10435 Drosophila erecta FBgn0102744 I 0.695
GI24583 Drosophila mojavensis FBgn0147305 I 0.695
GL22063 Drosophila persimilis FBgn0159655 I 0.695
GM10553 Drosophila sechellia FBgn0165499 I 0.695
GD19544 Drosophila simulans FBgn0191039 I 0.695
GJ22650 Drosophila virilis FBgn0209754 I 0.695
GK13786 Drosophila willistoni FBgn0215794 I 0.695
GE24099 Drosophila yakuba FBgn0241238 I 0.695
ISCW001129 Ixodes scapularis ISCW001129 I 0.695
TC008959 Tribolium castaneum TC008959 I 0.694
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.693
PHUM035280 Pediculus humanus PHUM035280 I 0.693
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.690
CLEC011984 Cimex lectularius CLEC011984 I 0.690
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.689
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.689
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.688
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.688
Aan_R010941 Calypte anna Aan_R010941 I 0.687
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.687
D915_00887 Fasciola hepatica D915_00887 I 0.687
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.682
ECPE_0001391801 Echinostoma caproni ECPE_0001391801 N 0.678
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.672
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.671
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.671
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.670
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.669
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.665
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.664
TriadG51266 Trichoplax adhaerens TriadG51266 I 0.663
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.658
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.657
GB42844 Apis mellifera GB42844 N 0.657
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.655
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.654
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.653
tetur05g07120 Tetranychus urticae tetur05g07120 N 0.652
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.651
MESCA006788 Megaselia scalaris MESCA006788 N 0.651
SPU_002235 Strongylocentrotus purpuratus SPU_002235 I 0.650
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.650