ENSPSIG00000012728 (Pelodiscus sinensis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSPSIG00000012728 T319471_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.985 0.985
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.985 0.985
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.985 0.985
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.985 0.985
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.985 0.985
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.985 0.985
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.985 0.985
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.985 0.985
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.985 0.985
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.985 0.985
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.985 0.985
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.985 0.985
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.931 0.931
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.931 0.931
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.931 0.931
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.931 0.931
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.931 0.931
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.931 0.931
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.931 0.931
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.931 0.931
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.931 0.931
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.931 0.931
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.931 0.931
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.931 0.931
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.915 0.915
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.915 0.915
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.915 0.915
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.915 0.915
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.915 0.915
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.915 0.915
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.915 0.915
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.915 0.915
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.915 0.915
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.915 0.915
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.915 0.915
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.915 0.915
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.723 0.723
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.723 0.723
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.723 0.723
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000014228 Runt 48 177

Links

Other Runt family TFs
Other Pelodiscus sinensis TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PEQ_0000361701 Parascaris equorum PEQ_0000361701 N 0.000
L596_g21063 Steinernema carpocapsae L596_g21063 N 0.000
L889_g15246 Steinernema feltiae L889_g15246 N 0.000
L893_g5132 Steinernema glaseri L893_g5132 N 0.000
L898_g4344 Steinernema monticolum L898_g4344 N 0.000
MhA1_Contig659.frz3.gene12 Meloidogyne hapla MhA1_Contig659.frz3.gene12 N 0.000
nAv.1.0.1.g02876 Acanthocheilonema viteae nAv.1.0.1.g02876 N 0.000
nDi.2.2.2.g08539 Dirofilaria immitis nDi.2.2.2.g08539 N 0.000
nOo.2.0.1.g06284 Onchocerca ochengi nOo.2.0.1.g06284 N 0.000
HCOI01584000 Haemonchus contortus HCOI01584000 N 0.000
PTRK_0001052400 Parastrongyloides trichosuri PTRK_0001052400 N 0.000
SPAL_0000096300 Strongyloides papillosus SPAL_0000096300 N 0.000
SSTP_0000137400 Strongyloides stercoralis SSTP_0000137400 N 0.000
SVE_0382900 Strongyloides venezuelensis SVE_0382900 N 0.000
TCLT_0000822701 Thelazia callipaeda TCLT_0000822701 N 0.000
TCNE_0001786701 Toxocara canis TCNE_0001786701 N 0.000
TELCIR_17986 Teladorsagia circumcincta TELCIR_17986 N 0.000
TELCIR_20778 Teladorsagia circumcincta TELCIR_20778 N 0.000
Minc00757 Meloidogyne incognita Minc00757 N 0.000
Bm3899 Brugia malayi Bm3899 N 0.000
CBG02231 Caenorhabditis briggsae CBG02231 N 0.000
CBN00758 Caenorhabditis brenneri CBN00758 N 0.000
CBN06012 Caenorhabditis brenneri CBN06012 N 0.000
CJA12147 Caenorhabditis japonica CJA12147 N 0.000
CRE29609 Caenorhabditis remanei CRE29609 N 0.000
LOAG_18157 Loa loa LOAG_18157 N 0.000
tag-68 Caenorhabditis elegans WBGene00006445 N 0.000
WUBG_00492 Wuchereria bancrofti WUBG_00492 N 0.000
Minc01466 Meloidogyne incognita Minc01466 N 0.000
ANCDUO_19967 Ancylostoma duodenale ANCDUO_19967 N 0.000
ASIM_0001677501 Anisakis simplex ASIM_0001677501 N 0.000
ASU_12719 Ascaris suum ASU_12719 N 0.000
BTMF_0001429501 Brugia timori BTMF_0001429501 N 0.000
BXY_0574800 Bursaphelenchus xylophilus BXY_0574800 N 0.000
EVEC_0000982901 Enterobius vermicularis EVEC_0000982901 N 0.000
GPUH_0002405001 Gongylonema pulchrum GPUH_0002405001 N 0.000