CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OPUNC03G02270
(
Oryza punctata
)
RWP-RK
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02042 (RWP-RK)
IPR003035
OPUNC03G02270
T320625_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NLP4
M07248_2.00
Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN
Dap-seq
OMalley et al.(2016)
AtNLP4_col_b
0.816
0.816
NLP7
M07251_2.00
Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW
Dap-seq
OMalley et al.(2016)
NLP7_col_a
0.776
0.776
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OPUNC03G02270.1
RWP-RK
627
675
TVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV
Links
Other
RWP-RK
family TFs
Other
Oryza punctata
TFs
407 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10006519m.g
Citrus clementina
Ciclev10006519m.g
I
0.000
Ciclev10013728m.g
Citrus clementina
Ciclev10013728m.g
I
0.000
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.000
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.000
LjSGA_024860.1
Lotus japonicus
LjSGA_024860.1
I
0.000
LjSGA_102554.1
Lotus japonicus
LjSGA_102554.1
I
0.000
GLYMA10G28320
Glycine max
GLYMA10G28320
N
0.000
MTR_1g084950
Medicago truncatula
MTR_1g084950
N
0.000
MTR_5g047580
Medicago truncatula
MTR_5g047580
N
0.000