Pavir.Aa00708 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Aa00708 T321211_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00708.1.p RWP-RK 177 225
Pavir.Aa00708.2.p RWP-RK 174 222

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SS1G_04655 Sclerotinia sclerotiorum SS1G_04655 N 0.000
NechaG66814 Fusarium solani NechaG66814 N 0.000
OCS_01259 Ophiocordyceps sinensis OCS_01259 N 0.000
OIDMADRAFT_41356 Oidiodendron maius OIDMADRAFT_41356 N 0.000
PV04_06890 Capronia semiimmersa PV04_06890 N 0.000
PV06_02579 Exophiala oligosperma PV06_02579 N 0.000
PV07_03724 Cladophialophora immunda PV07_03724 N 0.000
PV10_08689 Exophiala mesophila PV10_08689 N 0.000
PV11_06703 Exophiala sideris PV11_06703 N 0.000
S40285_06361 Stachybotrys chlorohalonata S40285_06361 N 0.000
SPBR_01645 Sporothrix brasiliensis SPBR_01645 N 0.000
MBR_02363 Metarhizium brunneum MBR_02363 N 0.000
TRIATDRAFT_298410 Trichoderma atroviride TRIATDRAFT_298410 N 0.000
TRIREDRAFT_65315 Trichoderma reesei TRIREDRAFT_65315 N 0.000
TRIVIDRAFT_208681 Trichoderma virens TRIVIDRAFT_208681 N 0.000
VHEMI03871 Torrubiella hemipterigena VHEMI03871 N 0.000
X797_000370 Metarhizium robertsii X797_000370 N 0.000
Z517_00960 Fonsecaea pedrosoi Z517_00960 N 0.000
Z518_02769 Rhinocladiella mackenziei Z518_02769 N 0.000
Z519_03993 Cladophialophora bantiana Z519_03993 N 0.000
estExt_Genewise1Plus.C_sca_18_chr2_1_02126 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_02126 N 0.000
FPSE_09669 Fusarium pseudograminearum FPSE_09669 N 0.000
A1O5_08664 Cladophialophora psammophila A1O5_08664 N 0.000
A1O7_06479 Cladophialophora yegresii A1O7_06479 N 0.000
ACRE_051010 Acremonium chrysogenum ACRE_051010 N 0.000
BBA_03393 Beauveria bassiana BBA_03393 N 0.000
Bcin01g08080 Botrytis cinerea Bcin01g08080 N 0.000
CCM_00337 Cordyceps militaris CCM_00337 N 0.000
CPUR_04232 Claviceps purpurea CPUR_04232 N 0.000
FFUJ_04132 Fusarium fujikuroi FFUJ_04132 N 0.000
FGRRES_09277 Fusarium graminearum FGRRES_09277 N 0.000
FOXG_14212 Fusarium oxysporum FOXG_14212 N 0.000
A1O1_06448 Capronia coronata A1O1_06448 N 0.000
G647_06053 Cladophialophora carrionii G647_06053 N 0.000
GMDG_02083 Pseudogymnoascus destructans GMDG_02083 N 0.000
HMPREF1120_03961 Exophiala dermatitidis HMPREF1120_03961 N 0.000
HMPREF1624_03632 Sporothrix schenckii HMPREF1624_03632 N 0.000
MAC_08284 Metarhizium acridum MAC_08284 N 0.000
MAJ_00301 Metarhizium majus MAJ_00301 N 0.000
MAM_02763 Metarhizium album MAM_02763 N 0.000
MANI_026709 Metarhizium anisopliae MANI_026709 N 0.000
MBM_05804 Marssonina brunnea MBM_05804 N 0.000