Pavir.Aa00708 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Aa00708 T321211_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00708.1.p RWP-RK 177 225
Pavir.Aa00708.2.p RWP-RK 174 222

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.959
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.892
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.878
Pavir.J14787 Panicum virgatum Pavir.J14787 N 0.871
Si020172m.g Setaria italica Si020172m.g I 0.865
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.857
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.857
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.857
Si008273m.g Setaria italica Si008273m.g I 0.857
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.857
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.857
Si019159m.g Setaria italica Si019159m.g N 0.848
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.837
F775_07483 Aegilops tauschii F775_07483 I 0.837
OB02G39310 Oryza brachyantha OB02G39310 I 0.837
OB06G17750 Oryza brachyantha OB06G17750 I 0.837
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.837
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.837
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.837
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.837
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.837
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.837
OS06G0228950 Oryza sativa OS06G0228950 I 0.837
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.837
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.837
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.816
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.816
OBART02G32320 Oryza barthii OBART02G32320 I 0.816
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.816
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.816
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.816
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.816
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.816
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.811
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.796
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.796
Pavir.J17077 Panicum virgatum Pavir.J17077 N 0.795
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.776
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.755
mg020279m Mimulus guttatus mg020279m I 0.755
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.755
F775_00225 Aegilops tauschii F775_00225 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.735
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.735
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.735
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.735
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.735
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.735
30138.m004071 Ricinus communis 30138.m004071 I 0.735
mgf022310m Mimulus guttatus mgf022310m I 0.735
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.735
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.735
MDP0000266172 Malus domestica MDP0000266172 I 0.735
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.731
RKD1 Arabidopsis thaliana AT1G18790 I 0.714
RKD2 Arabidopsis thaliana AT1G74480 D 0.714
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.714
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.714
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.714
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.714
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.714
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.714
OBART01G19230 Oryza barthii OBART01G19230 N 0.714
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.714
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.714
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.714
POPTR_0012s02390 Populus trichocarpa POPTR_0012s02390 N 0.714
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.714
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.714
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.714
Si005102m.g Setaria italica Si005102m.g N 0.714
Ca_13151 Cicer arietinum Ca_13151 I 0.714
Pm024905 Prunus mume Pm024905 I 0.714
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.714
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.714
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.714
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.714
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.714
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.711