CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PDK_20s1383532g001
(
Phoenix dactylifera
)
RWP-RK
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02042 (RWP-RK)
IPR003035
PDK_20s1383532g001
T321328_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.735
0.735
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1383532g001
RWP-RK
50
98
ALTFEEVSHYFYMPITQAAKELNIGVTLLKKKCRELGIPRWPHRKLKSL
Links
Other
RWP-RK
family TFs
Other
Phoenix dactylifera
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA022580
Oryza indica
BGIOSGA022580
I
0.878
LPERR06G07570
Leersia perrieri
LPERR06G07570
I
0.878
OMERI06G09770
Oryza meridionalis
OMERI06G09770
I
0.878
ONIVA06G09450
Oryza nivara
ONIVA06G09450
I
0.878
OPUNC06G07940
Oryza punctata
OPUNC06G07940
I
0.878
ORGLA06G0077700
Oryza glaberrima
ORGLA06G0077700
I
0.878
ORUFI06G08510
Oryza rufipogon
ORUFI06G08510
I
0.878
OS06G0228950
Oryza sativa
OS06G0228950
I
0.878
OB06G17750
Oryza brachyantha
OB06G17750
I
0.857
F775_07483
Aegilops tauschii
F775_07483
I
0.837
MLOC_59560
Hordeum vulgare
MLOC_59560
I
0.837
Traes_7DS_405F08A53
Triticum aestivum
Traes_7DS_405F08A53
I
0.837
TRIUR3_19503
Triticum urartu
TRIUR3_19503
I
0.837
Pavir.Da01160
Panicum virgatum
Pavir.Da01160
I
0.837
Pavir.J13146
Panicum virgatum
Pavir.J13146
I
0.837
GRMZM2G392306
Zea mays
GRMZM2G392306
I
0.816
Sb10g008120
Sorghum bicolor
Sb10g008120
I
0.816
Si008273m.g
Setaria italica
Si008273m.g
I
0.816
mgf022310m
Mimulus guttatus
mgf022310m
I
0.816
AMTR_s00057p00091350
Amborella trichopoda
AMTR_s00057p00091350
I
0.811
MTR_0140s0010
Medicago truncatula
MTR_0140s0010
I
0.800
fgenesh1_pg.C_scaffold_2000886
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000886
I
0.796
fgenesh1_pg.C_scaffold_8002648
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002648
I
0.796
scaffold_103100001.1
Arabidopsis lyrata
scaffold_103100001.1
I
0.796
MDP0000266172
Malus domestica
MDP0000266172
I
0.796
Thhalv10005560m.g
Eutrema salsugineum
Thhalv10005560m.g
N
0.796
Si020172m.g
Setaria italica
Si020172m.g
I
0.784
Si019159m.g
Setaria italica
Si019159m.g
N
0.783
orange1.1g036926m.g
Citrus sinensis
orange1.1g036926m.g
I
0.778
RKD1
Arabidopsis thaliana
AT1G18790
I
0.776
RKD3
Arabidopsis thaliana
AT5G66990
N
0.776
fgenesh1_pg.C_scaffold_2001738
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001738
I
0.776
fgenesh2_kg.1__2057__AT1G18790.1
Arabidopsis lyrata
fgenesh2_kg.1__2057__AT1G18790.1
I
0.776
PRUPE_ppa023107mg
Prunus persica
PRUPE_ppa023107mg
I
0.776
Pm024905
Prunus mume
Pm024905
I
0.776
30138.m004071
Ricinus communis
30138.m004071
I
0.776
cassava35166.m1
Manihot esculenta
cassava35166.m1
I
0.776
mg020279m
Mimulus guttatus
mg020279m
I
0.776
Cagra.0402s0077
Capsella grandiflora
Cagra.0402s0077
I
0.776
Cagra.2007s0003
Capsella grandiflora
Cagra.2007s0003
N
0.776
Carubv10021541m.g
Capsella rubella
Carubv10021541m.g
I
0.776
Carubv10027579m.g
Capsella rubella
Carubv10027579m.g
N
0.776
Pavir.Ab02992
Panicum virgatum
Pavir.Ab02992
I
0.776
MLOC_12609
Hordeum vulgare
MLOC_12609
I
0.757
AMTR_s00021p00218190
Amborella trichopoda
AMTR_s00021p00218190
N
0.755
OB02G39310
Oryza brachyantha
OB02G39310
I
0.755
Cla019404
Citrullus lanatus
Cla019404
I
0.755
Bostr.0568s0123
Boechera stricta
Bostr.0568s0123
N
0.755
Bostr.3288s0094
Boechera stricta
Bostr.3288s0094
I
0.755
Cagra.4153s0001
Capsella grandiflora
Cagra.4153s0001
I
0.755
Carubv10011133m.g
Capsella rubella
Carubv10011133m.g
I
0.755
gene26015-v1.0-hybrid
Fragaria vesca
gene26015-v1.0-hybrid
I
0.755
MDP0000261199
Malus domestica
MDP0000261199
I
0.755
Pavir.Aa00708
Panicum virgatum
Pavir.Aa00708
I
0.755
Thhalv10019554m.g
Eutrema salsugineum
Thhalv10019554m.g
I
0.755
RKD2
Arabidopsis thaliana
AT1G74480
D
0.735
BGIOSGA005630
Oryza indica
BGIOSGA005630
I
0.735
Bo7g064180
Brassica oleracea
Bo7g064180
I
0.735
Bra012122
Brassica rapa
Bra012122
I
0.735
OBART02G32320
Oryza barthii
OBART02G32320
I
0.735
OGLUM02G32960
Oryza glumaepatula
OGLUM02G32960
I
0.735
OMERI02G30990
Oryza meridionalis
OMERI02G30990
I
0.735
ONIVA06G04700
Oryza nivara
ONIVA06G04700
I
0.735
OPUNC02G29870
Oryza punctata
OPUNC02G29870
I
0.735
ORGLA02G0278600
Oryza glaberrima
ORGLA02G0278600
I
0.735
ORUFI02G34010
Oryza rufipogon
ORUFI02G34010
I
0.735
Sb04g028040
Sorghum bicolor
Sb04g028040
N
0.735
Solyc03g116010.1
Solanum lycopersicum
Solyc03g116010.1
I
0.735
TCM_014009
Theobroma cacao
TCM_014009
I
0.735
Traes_6BL_301505440
Triticum aestivum
Traes_6BL_301505440
I
0.735
evm.TU.supercontig_423.7
Carica papaya
evm.TU.supercontig_423.7
I
0.735
Gorai.008G193400
Gossypium raimondii
Gorai.008G193400
I
0.735
Lus10035008.g
Linum usitatissimum
Lus10035008.g
I
0.735
Genemark1.7281_g
Coccomyxa subellipsoidea C169
Genemark1.7281_g
I
0.731
Bo8g068090
Brassica oleracea
Bo8g068090
I
0.714
Bra008153
Brassica rapa
Bra008153
I
0.714
Bra015907
Brassica rapa
Bra015907
I
0.714
Bra016542
Brassica rapa
Bra016542
I
0.714
BRADI1G45170
Brachypodium distachyon
BRADI1G45170
N
0.714
F775_00225
Aegilops tauschii
F775_00225
I
0.714
GLYMA04G33516
Glycine max
GLYMA04G33516
I
0.714
GLYMA05G01030
Glycine max
GLYMA05G01030
I
0.714
GSMUA_AchrUn_randomG11290_001
Musa acuminata
GSMUA_AchrUn_randomG11290_001
N
0.714
LPERR02G26470
Leersia perrieri
LPERR02G26470
N
0.714
MTR_3g435550
Medicago truncatula
MTR_3g435550
I
0.714
OLONG_016325
Oryza longistaminata
OLONG_016325
I
0.714
Traes_6DL_8ECBBC867
Triticum aestivum
Traes_6DL_8ECBBC867
I
0.714
VIT_17s0000g06250
Vitis vinifera
VIT_17s0000g06250
I
0.714
Ca_13151
Cicer arietinum
Ca_13151
I
0.714
Gorai.006G266900
Gossypium raimondii
Gorai.006G266900
I
0.714
Lus10019100.g
Linum usitatissimum
Lus10019100.g
I
0.714
Lus10034456.g
Linum usitatissimum
Lus10034456.g
I
0.714
chr4.CM0087.990.nc
Lotus japonicus
chr4.CM0087.990.nc
I
0.714