Bra004674 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra004674 T322459_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.966 0.960
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.966 0.960
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.966 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004674.1-P SBP 73 147

Links

Other SBP family TFs
Other Brassica rapa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0146300 Oryza glaberrima ORGLA03G0146300 N
Pavir.J20659 Panicum virgatum Pavir.J20659 N
Pavir.Da01921 Panicum virgatum Pavir.Da01921 N
Traes_4DL_73DC40D7B Triticum aestivum Traes_4DL_73DC40D7B N
Traes_4BL_DAFEC95DD Triticum aestivum Traes_4BL_DAFEC95DD N
Traes_4AS_6EDD5ACF7 Triticum aestivum Traes_4AS_6EDD5ACF7 N
Si036527m.g Setaria italica Si036527m.g N
Si006667m.g Setaria italica Si006667m.g N
Sb01g037050 Sorghum bicolor Sb01g037050 N
TGA2.2 Oryza sativa OS03G0318600 N
ORUFI03G15900 Oryza rufipogon ORUFI03G15900 N
BGIOSGA010850 Oryza indica BGIOSGA010850 N
OPUNC03G14770 Oryza punctata OPUNC03G14770 N
ONIVA03G16290 Oryza nivara ONIVA03G16290 N
OMERI03G13930 Oryza meridionalis OMERI03G13930 N
OLONG_001724 Oryza longistaminata OLONG_001724 N
OGLUM03G15460 Oryza glumaepatula OGLUM03G15460 N
MLOC_64008 Hordeum vulgare MLOC_64008 N
GRMZM2G174284 Zea mays GRMZM2G174284 N
GRMZM2G056099 Zea mays GRMZM2G056099 N
BRADI1G64060 Brachypodium distachyon BRADI1G64060 N
BRADI1G43900 Brachypodium distachyon BRADI1G43900 N