Bra004674 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra004674 T322459_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.966 0.960
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.966 0.960
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.966 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004674.1-P SBP 73 147

Links

Other SBP family TFs
Other Brassica rapa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g015800 Brassica oleracea Bo4g015800 I 0.983
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.981
Bo4g191350 Brassica oleracea Bo4g191350 I 0.979
Bra016891 Brassica rapa Bra016891 I 0.979
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.973
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.973
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.973
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.973
SPL9 Arabidopsis thaliana AT2G42200 D 0.966
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.932
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.926
Si030195m.g Setaria italica Si030195m.g I 0.922
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.922
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.922
TCM_024873 Theobroma cacao TCM_024873 I 0.914
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.914
29269.m000250 Ricinus communis 29269.m000250 I 0.914
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.914
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.911
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.911
Pm002693 Prunus mume Pm002693 I 0.911
MDP0000297978 Malus domestica MDP0000297978 I 0.911
PK18312.1 Cannabis sativa PK18312.1 I 0.911
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.909
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.908
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.907
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.907
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.905
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.905
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.903
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.903
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.902
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.902
F775_10743 Aegilops tauschii F775_10743 I 0.900
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.896
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.896
OBART09G14800 Oryza barthii OBART09G14800 I 0.896
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.896
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.896
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.896
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.896
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.896
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.896
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.896
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.896
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.896
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.895
Bra004363 Brassica rapa Bra004363 N 0.892
Bo6g108620 Brassica oleracea Bo6g108620 N 0.891
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.890
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.890
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.890
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.890
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.890
SPL14 Oryza sativa OS08G0509600 I 0.890
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.889
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.889
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.889
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.888