Bra022954 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra022954 T322469_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.977 0.894
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.977 0.894
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.977 0.894
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.932 0.818
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.926 0.697
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.926 0.697
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.926 0.697
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.925 0.682
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.924 0.697
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.923 0.697
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.920 0.803
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.918 0.742
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.917 0.697
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.917 0.697
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.917 0.697
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.915 0.682
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.907 0.682
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.899 0.742
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.899 0.742
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.899 0.742
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022954.1-P SBP 1 66

Links

Other SBP family TFs
Other Brassica rapa TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Rela Mus musculus ENSMUSG00000024927 D
RELA Homo sapiens ENSG00000173039 D
RELA Tupaia belangeri ENSTBEG00000004751 I
ENSOPRG00000010827 Ochotona princeps ENSOPRG00000010827 I
ENSPANG00000013650 Papio anubis ENSPANG00000013650 I
ENSPPYG00000003053 Pongo abelii ENSPPYG00000003053 I
ENSPSIG00000002944 Pelodiscus sinensis ENSPSIG00000002944 I
RELA Pan troglodytes ENSPTRG00000003889 I
RELA Pteropus vampyrus ENSPVAG00000009983 I
RELA Sorex araneus ENSSARG00000003535 I
RELA Sus scrofa ENSSSCG00000012981 I
ENSSTOG00000027336 Ictidomys tridecemlineatus ENSSTOG00000027336 I
ENSOARG00000017426 Ovis aries ENSOARG00000017426 I
RELA Tursiops truncatus ENSTTRG00000002311 I
Cmyd_10013204 Chelonia mydas Cmyd_10013204 I
ENSP00000384273-D1 Bos grunniens ENSP00000384273-D1 I
ENSP00000384273 Macaca fascicularis ENSP00000384273 I
Myotis_brandtii_Rela_10030730 Myotis brandtii Myotis_brandtii_Rela_10030730 I
Ogr00666 Ophisaurus gracilis Ogr00666 I
Pvit_10466 Pogona vitticeps Pvit_10466 I
rela Xenopus tropicalis XB-GENE-946506 I
rela.L Xenopus laevis XB-GENE-946512 I
RELA Gorilla gorilla ENSGGOG00000011810 I
RELA Bos taurus ENSBTAG00000013895 I
RELA Canis familiaris ENSCAFG00000013334 I
ENSCHOG00000004207 Choloepus hoffmanni ENSCHOG00000004207 I
RELA Callithrix jacchus ENSCJAG00000002037 I
RELA Cavia porcellus ENSCPOG00000020593 I
ENSCSAG00000007981 Chlorocebus sabaeus ENSCSAG00000007981 I
RELA Dasypus novemcinctus ENSDNOG00000039743 I
RELA Equus caballus ENSECAG00000013763 I
RELA Felis catus ENSFCAG00000005696 I
RELA Otolemur garnettii ENSOGAG00000014117 I
RELA Loxodonta africana ENSLAFG00000021967 I
RELA Microcebus murinus ENSMICG00000008872 I
RELA Myotis lucifugus ENSMLUG00000008727 I
RELA Macaca mulatta ENSMMUG00000007418 I
RELA Monodelphis domestica ENSMODG00000009603 I
ENSMPUG00000011637 Mustela putorius furo ENSMPUG00000011637 I
ENSNLEG00000005769 Nomascus leucogenys ENSNLEG00000005769 I
ENSAMEG00000017369 Ailuropoda melanoleuca ENSAMEG00000017369 I