CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10012577m.g *(Capsella rubella)* SBP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03110 (SBP)	IPR004333	Carubv10012577m.g	T323416_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SPL14 M02470_2.00	Arabidopsis thaliana	NNNRTACNN	NNGTAYNNN	PBM Weirauch et al.(2014) pTH8191	0.982	1.000
SPL14 M07253_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL14_col_a	0.982	1.000
SPL14 M11270_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SPL14_01	0.982	1.000
POPTR_0002s00440 M02477_2.00	Populus trichocarpa	NGTACGG	CCGTACN	PBM Weirauch et al.(2014) pTH9280	0.980	0.933
AT1G76580 M02473_2.00	Arabidopsis thaliana	NNNRTAYNNN	NNNRTAYNNN	PBM Weirauch et al.(2014) pTH8668	0.977	0.960
SPL12 M02475_2.00	Arabidopsis thaliana	NGTACGDN	NHCGTACN	PBM Weirauch et al.(2014) pTH7500	0.974	0.840
PRUPE_ppa000682mg M02478_2.00	Prunus persica	NNNNGTACGD	HCGTACNNNN	PBM Weirauch et al.(2014) pTH9281	0.970	0.920
PK06791.1 M02482_2.00	Cannabis sativa	NNGTACGRN	NYCGTACNN	PBM Weirauch et al.(2014) pTH9583	0.970	0.827
SPL4 M02472_2.00	Arabidopsis thaliana	NRTACDDNN	NNHHGTAYN	PBM Weirauch et al.(2014) pTH7408	0.962	0.720
SPL1 M00887_2.00	Arabidopsis thaliana	NGTACGGHN	NDCCGTACN	PBM Franco-Zorrilla et al.(2014) SPL1	0.959	0.827
SPL1 M07259_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL1_col_a	0.959	0.827
SPL1 M07260_2.00	Arabidopsis thaliana	NNGTACGKWH	DWMCGTACNN	Dap-seq OMalley et al.(2016) SPL1_colamp_a	0.959	0.827
SPL5 M02474_2.00	Arabidopsis thaliana	NNGTACGDN	NHCGTACNN	PBM Weirauch et al.(2014) pTH7385	0.957	0.720
SPL5 M07261_2.00	Arabidopsis thaliana	NDNYGTACGGAH	DTCCGTACRNHN	Dap-seq OMalley et al.(2016) SPL5_col_a	0.957	0.720
SPL5 M07262_2.00	Arabidopsis thaliana	NBGTACGGWH	DWCCGTACVN	Dap-seq OMalley et al.(2016) SPL5_colamp_a	0.957	0.720
PK22320.1 M02483_2.00	Cannabis sativa	NNGTACGGNN	NNCCGTACNN	PBM Weirauch et al.(2014) pTH9723	0.951	0.707
estExt_fgenesh1_pg.C_1940033 M02479_2.00	Physcomitrella patens	NNGTACGDH	DHCGTACNN	PBM Weirauch et al.(2014) pTH8664	0.947	0.733
SPL3 M07255_2.00	Arabidopsis thaliana	NGTACGGA	TCCGTACN	Dap-seq OMalley et al.(2016) SPL3_col_a	0.931	0.693
SPL3 M07256_2.00	Arabidopsis thaliana	NDNTGTACGGAHN	NDTCCGTACANHN	Dap-seq OMalley et al.(2016) SPL3_colamp_a	0.931	0.693
SPL3 M02715_2.00	Arabidopsis thaliana	DDDDDNGTACGKHHHH	DDDDMCGTACNHHHHH	SELEX Mathelier et al.(2014) MA0577.1	0.931	0.693
SPL13A M07265_2.00	Arabidopsis thaliana	DNYGTACGGWH	DWCCGTACRNH	Dap-seq OMalley et al.(2016) SPL13_col_a	0.907	0.653
For this family, TFs with SR scores > 0.885* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10012577m	SBP	133	207	CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKT

Links
Other SBP family TFs
Other *Capsella rubella* TFs

509 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

Carubv10012577m.g (Capsella rubella) SBP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

509 Related TFs

Carubv10012577m.g **(Capsella rubella)
SBP**