CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_27.40
(
Carica papaya
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
evm.TU.supercontig_27.40
T323470_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.914
0.720
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.914
0.720
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.914
0.720
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN
NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.898
0.747
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_27.40
SBP
61
135
CQADHCTVDMGDAKRYYKRHKVCEYHAKASFVLVNGVQQRFCQQCSRFHEVSEFDDTKRSCRRRLAGHNERRRKS
Links
Other
SBP
family TFs
Other
Carica papaya
TFs
172 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy