Pavir.Da00293 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Da00293 T323621_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.915 0.813
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.904 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.893 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00293.1.p SBP 82 156

Links

Other SBP family TFs
Other Panicum virgatum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KMT2A Homo sapiens ENSG00000118058 D 0.000
kmt2a Xenopus tropicalis XB-GENE-922912 D 0.000
KMT2A Pteropus vampyrus ENSPVAG00000006246 I 0.000
kmt2a Takifugu rubripes ENSTRUG00000015266 I 0.000
kmt2a Tetraodon nigroviridis ENSTNIG00000019281 I 0.000
KMT2A Taeniopygia guttata ENSTGUG00000000065 I 0.000
KMT2A Tupaia belangeri ENSTBEG00000010928 I 0.000
ENSSTOG00000014405 Ictidomys tridecemlineatus ENSSTOG00000014405 I 0.000
ENSSHAG00000012641 Sarcophilus harrisii ENSSHAG00000012641 I 0.000
KMT2A Sorex araneus ENSSARG00000014520 I 0.000
Kmt2a Rattus norvegicus ENSRNOG00000015133 I 0.000
KMT2A Ochotona princeps ENSOPRG00000011275 I 0.000
KMT2A Pan troglodytes ENSPTRG00000004344 I 0.000
ENSPSIG00000007140 Pelodiscus sinensis ENSPSIG00000007140 I 0.000
ENSPPYG00000003935 Pongo abelii ENSPPYG00000003935 I 0.000
ENSPFOG00000015779 Poecilia formosa ENSPFOG00000015779 I 0.000
KMT2A Procavia capensis ENSPCAG00000005322 I 0.000
ENSPANG00000009309 Papio anubis ENSPANG00000009309 I 0.000
kmt2a Oryzias latipes ENSORLG00000007666 I 0.000
KMT2A Otolemur garnettii ENSOGAG00000009345 I 0.000
Cmyd_10004923 Chelonia mydas Cmyd_10004923 I 0.000
XP_002932945 Xenopus tropicalis XP_002932945 I 0.000
XP_002932944 Xenopus tropicalis XP_002932944 I 0.000
Pvit_19329 Pogona vitticeps Pvit_19329 I 0.000
Ogr09611 Ophisaurus gracilis Ogr09611 I 0.000
Myotis_brandtii_MLL_10033553 Myotis brandtii Myotis_brandtii_MLL_10033553 I 0.000
Gfo_R005086 Geospiza fortis Gfo_R005086 I 0.000
ENSP00000352262 Macaca fascicularis ENSP00000352262 I 0.000
ENSP00000352262-D1 Bos grunniens ENSP00000352262-D1 I 0.000
ENSTSYG00000012197 Tarsius syrichta ENSTSYG00000012197 I 0.000
Brh_R004761 Buceros rhinoceros Brh_R004761 I 0.000
Alligator_sinensis_CCG008345.1 Alligator sinensis Alligator_sinensis_CCG008345.1 I 0.000
Afo_R004252 Aptenodytes forsteri Afo_R004252 I 0.000
Aan_R001407 Calypte anna Aan_R001407 I 0.000
ENSXMAG00000008735 Xiphophorus maculatus ENSXMAG00000008735 I 0.000
KMT2A Vicugna pacos ENSVPAG00000005587 I 0.000
KMT2A Tursiops truncatus ENSTTRG00000004289 I 0.000
ENSCSAG00000002585 Chlorocebus sabaeus ENSCSAG00000002585 I 0.000
ENSFCAG00000031139 Felis catus ENSFCAG00000031139 I 0.000
ENSFALG00000009959 Ficedula albicollis ENSFALG00000009959 I 0.000
KMT2A Echinops telfairi ENSETEG00000009695 I 0.000
KMT2A Erinaceus europaeus ENSEEUG00000015428 I 0.000
KMT2A Equus caballus ENSECAG00000007743 I 0.000
Kmt2a Dipodomys ordii ENSDORG00000007239 I 0.000
KMT2A Dasypus novemcinctus ENSDNOG00000011530 I 0.000
kmt2a Danio rerio ENSDARG00000004537 I 0.000
kmt2a Gasterosteus aculeatus ENSGACG00000009009 I 0.000
KMT2A Cavia porcellus ENSCPOG00000005813 I 0.000
KMT2A Callithrix jacchus ENSCJAG00000013288 I 0.000
KMT2A Choloepus hoffmanni ENSCHOG00000007116 I 0.000
KMT2A Canis familiaris ENSCAFG00000012691 I 0.000
KMT2A Bos taurus ENSBTAG00000018093 I 0.000
ENSAPLG00000004837 Anas platyrhynchos ENSAPLG00000004837 I 0.000
ENSAMXG00000001402 Astyanax mexicanus ENSAMXG00000001402 I 0.000
ENSAMEG00000013007 Ailuropoda melanoleuca ENSAMEG00000013007 I 0.000
KMT2A Myotis lucifugus ENSMLUG00000014086 I 0.000
KMT2A Anolis carolinensis ENSACAG00000007014 I 0.000
KMT2A Oryctolagus cuniculus ENSOCUG00000010127 I 0.000
ENSOARG00000009830 Ovis aries ENSOARG00000009830 I 0.000
ENSNLEG00000007365 Nomascus leucogenys ENSNLEG00000007365 I 0.000
Kmt2a Mus musculus ENSMUSG00000002028 I 0.000
ENSMPUG00000004640 Mustela putorius furo ENSMPUG00000004640 I 0.000
KMT2A Monodelphis domestica ENSMODG00000013474 I 0.000
KMT2A Macaca mulatta ENSMMUG00000005482 I 0.000
ENSONIG00000006229 Oreochromis niloticus ENSONIG00000006229 I 0.000
KMT2A Meleagris gallopavo ENSMGAG00000002737 I 0.000
ENSMEUG00000000157 Macropus eugenii ENSMEUG00000000157 I 0.000
ENSLOCG00000004045 Lepisosteus oculatus ENSLOCG00000004045 I 0.000
KMT2A Loxodonta africana ENSLAFG00000014805 I 0.000
ENSLACG00000018124 Latimeria chalumnae ENSLACG00000018124 I 0.000
ENSGMOG00000011724 Gadus morhua ENSGMOG00000011724 I 0.000
KMT2A Gorilla gorilla ENSGGOG00000000946 I 0.000
ENSGALG00000006818 Gallus gallus ENSGALG00000006818 I 0.000