fgenesh1_pg.scaffold_252000020 (Physcomitrella patens)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 fgenesh1_pg.scaffold_252000020 T323294_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00		 Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.980 0.947
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.936 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02481_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_252000020 SBP 433 507

Links

Other SBP family TFs
Other Physcomitrella patens TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.980
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.979
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.979
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.969
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.969
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.967
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.965
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.963
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.962
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.961
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.956
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.956
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.956
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.956
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.956
OB04G34990 Oryza brachyantha OB04G34990 I 0.956
OBART04G27990 Oryza barthii OBART04G27990 I 0.956
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.956
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.956
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.956
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.956
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.956
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.956
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.956
SPL8 Oryza sativa OS04G0656500 I 0.956
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.956
Si022315m.g Setaria italica Si022315m.g I 0.956
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.956
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.956
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.956
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.955
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.954
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.953
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.953
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.946
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.945
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.943
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.941
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.941
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.941
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.941
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.941
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.941
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.941
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.941
TCM_005622 Theobroma cacao TCM_005622 I 0.941
Ca_18942 Cicer arietinum Ca_18942 I 0.941
30174.m008803 Ricinus communis 30174.m008803 I 0.941
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.941
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.941
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.941
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.941
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.941
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.941
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.941
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.941
PK25779.1 Cannabis sativa PK25779.1 I 0.941
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.940
mgf016085m Mimulus guttatus mgf016085m I 0.939
MDP0000803116 Malus domestica MDP0000803116 I 0.939
Cla006776 Citrullus lanatus Cla006776 I 0.938
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.937
SPL8 Arabidopsis thaliana AT1G02065 D 0.936
Bo5g001290 Brassica oleracea Bo5g001290 I 0.936
Bo8g118210 Brassica oleracea Bo8g118210 I 0.936
Bra032662 Brassica rapa Bra032662 I 0.936
Bra033221 Brassica rapa Bra033221 I 0.936
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.936
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.936
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.936
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.936
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.936
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.935
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.934
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.933
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.930
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.930
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.929
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.927
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.927
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.926
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.919
PK17790.1 Cannabis sativa PK17790.1 I 0.919
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.918
Pm014154 Prunus mume Pm014154 I 0.918
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.915
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.912
Pm017777 Prunus mume Pm017777 I 0.912
Cla001541 Citrullus lanatus Cla001541 I 0.910
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.910
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.909
OB02G15090 Oryza brachyantha OB02G15090 I 0.909
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.908
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.907
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.906
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.906
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.906
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.906
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.906
SPL5 Oryza sativa OS02G0177300 I 0.906
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.905
Si017338m.g Setaria italica Si017338m.g I 0.905
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.905
SPL10 Oryza indica BGIOSGA023408 I 0.904
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.904
MLOC_326 Hordeum vulgare MLOC_326 I 0.904
OB06G31100 Oryza brachyantha OB06G31100 I 0.904
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.904
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.904
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.904
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.904
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.904
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.904
SPL10 Oryza sativa OS06G0659100 I 0.904
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.904
Si006559m.g Setaria italica Si006559m.g I 0.904
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.904
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.904
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.904
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.901
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.900
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.900
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.900
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.900
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.899
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.899
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.897
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.897
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.897
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.896
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.896
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.896
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.896
30138.m003942 Ricinus communis 30138.m003942 I 0.896
TCM_014330 Theobroma cacao TCM_014330 I 0.895
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.894
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.894
Cla018827 Citrullus lanatus Cla018827 I 0.894
Cla019331 Citrullus lanatus Cla019331 I 0.894
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.894
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.894
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.893
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.893
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.893
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.893
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.893
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.893
Ca_19449 Cicer arietinum Ca_19449 I 0.893
30174.m009082 Ricinus communis 30174.m009082 I 0.893
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.893
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.893
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.892
MDP0000146640 Malus domestica MDP0000146640 I 0.892
MDP0000778465 Malus domestica MDP0000778465 I 0.892
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.891
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.891
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.890
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.890
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.889
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.887
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.886