Pavir.Gb00284 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Gb00284 T323634_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.956 0.840
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.950 0.827
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.930 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00284.1.p SBP 161 236

Links

Other SBP family TFs
Other Panicum virgatum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.990
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.990
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.990
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.990
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.990
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.990
OB04G34990 Oryza brachyantha OB04G34990 I 0.990
OBART04G27990 Oryza barthii OBART04G27990 I 0.990
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.990
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.990
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.990
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.990
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.990
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.990
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.990
SPL8 Oryza sativa OS04G0656500 I 0.990
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.990
Si022315m.g Setaria italica Si022315m.g I 0.990
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.990
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.990
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.985
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.956
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.954
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.952
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.952
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.951
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.950
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.943
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.942
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.942
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.942
30190.m011329 Ricinus communis 30190.m011329 I 0.940
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.939
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.936
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.933
OB02G15090 Oryza brachyantha OB02G15090 I 0.933
SPL8 Arabidopsis thaliana AT1G02065 D 0.930
Bo5g001290 Brassica oleracea Bo5g001290 I 0.930
Bo8g118210 Brassica oleracea Bo8g118210 I 0.930
Bra032662 Brassica rapa Bra032662 I 0.930
Bra033221 Brassica rapa Bra033221 I 0.930
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.930
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.930
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.930
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.930
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.930
SPL10 Oryza indica BGIOSGA023408 I 0.929
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.929
MLOC_326 Hordeum vulgare MLOC_326 I 0.929
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.929
OB06G31100 Oryza brachyantha OB06G31100 I 0.929
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.929
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.929
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.929
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.929
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.929
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.929
SPL10 Oryza sativa OS06G0659100 I 0.929
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.929
Si006559m.g Setaria italica Si006559m.g I 0.929
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.929
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.929
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.929
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.927
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.927
TCM_005622 Theobroma cacao TCM_005622 I 0.927
30174.m008803 Ricinus communis 30174.m008803 I 0.927
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.927
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.927
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.927
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.927
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.927
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.927
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.927
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.927
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.926
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.926
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.926
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.926
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.926
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.926
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.926
Ca_18942 Cicer arietinum Ca_18942 I 0.926
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.926
PK25779.1 Cannabis sativa PK25779.1 I 0.926
mgf016085m Mimulus guttatus mgf016085m I 0.925
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.925
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.924
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.924
MDP0000803116 Malus domestica MDP0000803116 I 0.924
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.923
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.923
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.923
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.923
Cla006776 Citrullus lanatus Cla006776 I 0.923
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.922
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.922
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.922
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.921
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.921
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.920
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.918
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.918
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.917
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.917
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.916
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.916
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.914
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.914
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.913
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.912
mgf011616m Mimulus guttatus mgf011616m I 0.907
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.906
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.904
OBART06G23500 Oryza barthii OBART06G23500 I 0.903
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.900
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.900
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.900
SPL5 Oryza sativa OS02G0177300 I 0.900
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.899
Si017338m.g Setaria italica Si017338m.g I 0.899
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.897
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.896
Cla020006 Citrullus lanatus Cla020006 I 0.896
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.893
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.893
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.892
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.892
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.890
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.890
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.890
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.890
Pm017777 Prunus mume Pm017777 I 0.890
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.889
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.888
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.886