30190.m011329 (Ricinus communis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 30190.m011329 T323229_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.890 0.773
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.890 0.773
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.890 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m011329 SBP 57 131

Links

Other SBP family TFs
Other Ricinus communis TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.973
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.970
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.965
mgf011616m Mimulus guttatus mgf011616m I 0.965
Ca_00320 Cicer arietinum Ca_00320 I 0.964
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.962
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.960
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.960
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.960
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.959
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.959
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.954
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.954
Cla009788 Citrullus lanatus Cla009788 I 0.954
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.951
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.950
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.950
PK26639.1 Cannabis sativa PK26639.1 I 0.950
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.947
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.945
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.945
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.945
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.943
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.943
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.943
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.943
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.943
30174.m008805 Ricinus communis 30174.m008805 I 0.943
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.943
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.942
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.941
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.941
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.941
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.940
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.940
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.940
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.940
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.940
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.940
OB04G34990 Oryza brachyantha OB04G34990 I 0.940
OBART04G27990 Oryza barthii OBART04G27990 I 0.940
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.940
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.940
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.940
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.940
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.940
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.940
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.940
SPL8 Oryza sativa OS04G0656500 I 0.940
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.940
Si022315m.g Setaria italica Si022315m.g I 0.940
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.940
TCM_005620 Theobroma cacao TCM_005620 I 0.940
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.940
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.940
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.940
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.940
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.939
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.939
Ca_10879 Cicer arietinum Ca_10879 I 0.937
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.937
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.936
Si010262m.g Setaria italica Si010262m.g I 0.936
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.934
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.934
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.934
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.934
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.934
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.932
Si032170m.g Setaria italica Si032170m.g I 0.932
Pm014154 Prunus mume Pm014154 I 0.932
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.932
TCM_008150 Theobroma cacao TCM_008150 I 0.931
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.930
29983.m003158 Ricinus communis 29983.m003158 I 0.929
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.927
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.926
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.926
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.926
F775_02791 Aegilops tauschii F775_02791 I 0.924
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.924
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.924
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.924
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.924
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.924
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.924
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.922
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.921
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.920
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.919
MDP0000865739 Malus domestica MDP0000865739 I 0.917
TCM_017247 Theobroma cacao TCM_017247 N 0.916
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.916
Cla021411 Citrullus lanatus Cla021411 I 0.915
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.914
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.913
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.912
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.912
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.911
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.911
Pm010075 Prunus mume Pm010075 I 0.911
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.911
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.911
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.910
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.910
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.908
Cla023735 Citrullus lanatus Cla023735 I 0.908
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.908
LPERR07G13070 Leersia perrieri LPERR07G13070 N 0.907
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.906
OBART07G15570 Oryza barthii OBART07G15570 I 0.906
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.906
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.906
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.906
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.906
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.905
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.905
OBART04G20940 Oryza barthii OBART04G20940 I 0.905
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.905
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.905
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.905
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.905
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.905
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.905
SPL7 Oryza sativa OS04G0551500 I 0.905
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.905
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.905
Pm011381 Prunus mume Pm011381 I 0.905
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.905
MDP0000158607 Malus domestica MDP0000158607 I 0.905
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.904
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.904
OB04G27960 Oryza brachyantha OB04G27960 I 0.903
mgf025134m Mimulus guttatus mgf025134m I 0.902
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.902
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.901
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.901
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.901
Bo4g042390 Brassica oleracea Bo4g042390 I 0.900
Bra005470 Brassica rapa Bra005470 I 0.900
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.900
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.900
Ca_16243 Cicer arietinum Ca_16243 I 0.900
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.896
Pm017778 Prunus mume Pm017778 I 0.896
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.896
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.895
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.893
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.892
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.892
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.891
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.891
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.891
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.891
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.891
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.891
SPL3 Arabidopsis thaliana AT2G33810 D 0.890
Bra021880 Brassica rapa Bra021880 I 0.890
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.887
MDP0000156994 Malus domestica MDP0000156994 I 0.887
MDP0000262141 Malus domestica MDP0000262141 I 0.887
MDP0000861601 Malus domestica MDP0000861601 I 0.887
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.887