Alligator_sinensis_CCG001358.1 (Alligator sinensis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Alligator_sinensis_CCG001358.1 T325262_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad5
M11288_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_01 		1.000 1.000
Smad5
M11292_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_03 		1.000 1.000
SMAD1
M11286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_01 		0.961 0.961
SMAD1
M11287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_Q6 		0.961 0.961
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.931 0.931
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.931 0.931
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.931 0.931
Mad
M06446_2.00 		Drosophila melanogaster
GYGHCGBCVS
SBGVCGDCRC		 B1H
Zhu et al.(2011)
Mad_FlyReg_FBgn0011648 		0.892 0.892
Mad
M08427_2.00 		Drosophila melanogaster
SNGRCGMSRVSRBNS
SNVYSBYSKCGYCNS		 ChIP-chip
Mathelier et al.(2014)
MA0535.1 		0.892 0.892
Mad
M09692_2.00 		Drosophila melanogaster
KCBGSHGKCGCSNC
GNSGCGMCDSCVGM		 Misc
Kulakovskiy et al.(2009)
Mad 		0.892 0.892
Mad
M11293_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$MAD_Q6 		0.892 0.892
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001358.1 SMAD 31 132

Links

Other SMAD family TFs
Other Alligator sinensis TFs

408 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa003888mg Prunus persica PRUPE_ppa003888mg N
PDK_20s1646281g001 Phoenix dactylifera PDK_20s1646281g001 N
Pavir.Gb01403 Panicum virgatum Pavir.Gb01403 N
Pavir.Gb01197 Panicum virgatum Pavir.Gb01197 N
Pavir.Ga01522 Panicum virgatum Pavir.Ga01522 N
Pavir.Ga00650 Panicum virgatum Pavir.Ga00650 N
MDP0000309356 Malus domestica MDP0000309356 N
estExt_fgenesh1_pg.C_90243 Physcomitrella patens estExt_fgenesh1_pg.C_90243 N
Cucsa.321290 Cucumis sativus Cucsa.321290 N
Cucsa.313750 Cucumis sativus Cucsa.313750 N
Pm023342 Prunus mume Pm023342 N
Si011929m.g Setaria italica Si011929m.g N
Si010863m.g Setaria italica Si010863m.g N
Sb06g024200 Sorghum bicolor Sb06g024200 N
Sb01g011980 Sorghum bicolor Sb01g011980 N
AMTR_s00002p00191340 Amborella trichopoda AMTR_s00002p00191340 N
OS04G0544500 Oryza sativa OS04G0544500 N
ORUFI04G22090 Oryza rufipogon ORUFI04G22090 N
ORGLA04G0175700 Oryza glaberrima ORGLA04G0175700 N
OPUNC04G18160 Oryza punctata OPUNC04G18160 N
ONIVA04G18740 Oryza nivara ONIVA04G18740 N
OMERI03G30900 Oryza meridionalis OMERI03G30900 N
OGLUM04G20450 Oryza glumaepatula OGLUM04G20450 N
OB04G27470 Oryza brachyantha OB04G27470 N
GSMUA_Achr4G17880_001 Musa acuminata GSMUA_Achr4G17880_001 N
GRMZM2G421212 Zea mays GRMZM2G421212 N
GRMZM2G077002 Zea mays GRMZM2G077002 N
BGIOSGA014620 Oryza indica BGIOSGA014620 N
AMTR_s00025p00250050 Amborella trichopoda AMTR_s00025p00250050 N