CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Brh_R001115 *(Buceros rhinoceros)* SMAD
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03165 (MH1)	IPR003619	Brh_R001115	T325272_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Smad3 M00192_2.00	Mus musculus	NNNNNMGMCN	NGKCKNNNNN	PBM Badis et al.(2009) Smad3_3805	0.968	0.968
SMAD3 M03482_2.00	Homo sapiens	YGTCTAGACA	TGTCTAGACR	SELEX Jolma et al.(2013) SMAD3_1	0.968	0.968
SMAD3 M09380_2.00	Homo sapiens	NBCTSHCWSCWB	VWGSWGDSAGVN	Misc Kulakovskiy et al.(2013) SMAD3_HUMAN.H11MO.0.B	0.968	0.968
Smad3 M09384_2.00	Mus musculus	NBCTSHCWSCWB	VWGSWGDSAGVN	Misc Kulakovskiy et al.(2013) SMAD3_MOUSE.H11MO.0.B	0.968	0.968
Smad3 M09637_2.00	Mus musculus	BYAGMCWN	NWGKCTRV	Misc Heinz et al.(2010) NPC-Smad3_GSE36673	0.968	0.968
SMAD3 M11283_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD3_Q6_01	0.968	0.968
SMAD3 M11284_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD3_Q6_02	0.968	0.968
SMAD3 M11285_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD3_Q6	0.968	0.968
Mad M06446_2.00	Drosophila melanogaster	GYGHCGBCVS	SBGVCGDCRC	B1H Zhu et al.(2011) Mad_FlyReg_FBgn0011648	0.778	0.778
Mad M08427_2.00	Drosophila melanogaster	SNGRCGMSRVSRBNS	SNVYSBYSKCGYCNS	ChIP-chip Mathelier et al.(2014) MA0535.1	0.778	0.778
Mad M09692_2.00	Drosophila melanogaster	KCBGSHGKCGCSNC	GNSGCGMCDSCVGM	Misc Kulakovskiy et al.(2009) Mad	0.778	0.778
Mad M11293_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$MAD_Q6	0.778	0.778
SMAD1 M11286_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD1_01	0.778	0.778
SMAD1 M11287_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD1_Q6	0.778	0.778
SMAD9 M11274_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_01	0.778	0.778
Smad9 M11290_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_02	0.778	0.778
Smad9 M11289_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD8_03	0.778	0.778
Smad5 M11288_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_01	0.762	0.762
Smad5 M11292_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SMAD5_03	0.762	0.762
For this family, TFs with SR scores > 0.700* will likely have a similar motif*