Bra025838 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra025838 T326711_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.662 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025838.1-P Sox 32 101

Links

Other Sox family TFs
Other Brassica rapa TFs

309 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HAP2 Saccharomyces cerevisiae YGL237C D
AMAG_13560 Allomyces macrogynus AMAG_13560 I
AMAG_13812 Allomyces macrogynus AMAG_13812 I
CAOG_07995 Capsaspora owczarzaki CAOG_07995 I
CIMG_12689 Coccidioides immitis CIMG_12689 I
CLUG_05888 Candida lusitaniae CLUG_05888 I
CPAG_01070 Candida parapsilosis CPAG_01070 I
MCYG_07480 Microsporum canis MCYG_07480 I
RO3G_00980 Rhizopus oryzae RO3G_00980 I
RO3G_16178 Rhizopus oryzae RO3G_16178 I
SNOG_15220 Stagonospora nodorum SNOG_15220 I
SPPG_06102 Spizellomyces punctatus SPPG_06102 I
VDBG_05896 Verticillium albo atrum VDBG_05896 I
A1O1_05495 Capronia coronata A1O1_05495 I
A1O3_09102 Capronia epimyces A1O3_09102 I
A1O5_02864 Cladophialophora psammophila A1O5_02864 I
A1O7_06785 Cladophialophora yegresii A1O7_06785 I
A1O9_01381 Exophiala aquamarina A1O9_01381 I
A1Q1_02234 Trichosporon asahii A1Q1_02234 I
AACERI_AaceriAFR257W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR257W I
ACRE_010220 Acremonium chrysogenum ACRE_010220 I
AGOS_AFR257W Ashbya gossypii AGOS_AFR257W I
AOL_s00078g307 Arthrobotrys oligospora AOL_s00078g307 I
ARB_03649 Arthroderma benhamiae ARB_03649 I
AUEXF2481DRAFT_28704 Aureobasidium subglaciale AUEXF2481DRAFT_28704 I
AWRI1499_3546 Brettanomyces bruxellensis AWRI1499_3546 I
BAUCODRAFT_76416 Baudoinia compniacensis BAUCODRAFT_76416 I
BBA_01157 Beauveria bassiana BBA_01157 I
Bcin02g03320 Botrytis cinerea Bcin02g03320 I
BDDG_01364 Blastomyces dermatitidis BDDG_01364 I
BGHDH14_bgh02253 Blumeria graminis BGHDH14_bgh02253 I
BN7_6362 Wickerhamomyces ciferrii BN7_6362 I
BN946_scf184796.g4 Trametes cinnabarina BN946_scf184796.g4 I
BOTBODRAFT_182611 Botryobasidium botryosum BOTBODRAFT_182611 I
ACLA_072760 Aspergillus clavatus CADACLAG00007067 I
CADAFLAG00007032 Aspergillus flavus CADAFLAG00007032 I
AFUA_2G14720 Aspergillus fumigatus CADAFUAG00004810 I
CADANGAG00012044 Aspergillus niger CADANGAG00012044 I
ANIA_07545 Aspergillus nidulans CADANIAG00000651 I
CADAORAG00008808 Aspergillus oryzae CADAORAG00008808 I
ATEG_07814 Aspergillus terreus CADATEAG00001961 I
NFIA_089950 Neosartorya fischeri CADNFIAG00007039 I
CAGL0H07843g Candida glabrata CAGL0H07843g I
CANTEDRAFT_116468 Candida tenuis CANTEDRAFT_116468 I
CaO19.1228 Candida albicans CaO19.1228 I
CaO19.8814 Candida albicans CaO19.8814 I
CC1G_07415 Coprinopsis cinerea CC1G_07415 I
CCM_02243 Cordyceps militaris CCM_02243 I
CD36_07150 Candida dubliniensis CD36_07150 I
CERSUDRAFT_114103 Ceriporiopsis subvermispora CERSUDRAFT_114103 I
CFIO01_03727 Colletotrichum fioriniae CFIO01_03727 I
CGGC5_14765 Colletotrichum gloeosporioides CGGC5_14765 I
CGI_10012001 Crassostrea gigas CGI_10012001 I
CH063_08450 Colletotrichum higginsianum CH063_08450 I
CHGG_05974 Chaetomium globosum CHGG_05974 I
CLUG_05888 Clavispora lusitaniae CLUG_05888 I
CMQ_1414 Grosmannia clavigera CMQ_1414 I
CND03290 Cryptococcus neoformans CND03290 I
Cob_12224 Colletotrichum orbiculare Cob_12224 I
COCC4DRAFT_21556 Bipolaris maydis COCC4DRAFT_21556 I
COCCADRAFT_25556 Bipolaris zeicola COCCADRAFT_25556 I
COCMIDRAFT_31784 Bipolaris oryzae COCMIDRAFT_31784 I
COCSADRAFT_336507 Bipolaris sorokiniana COCSADRAFT_336507 I
COCVIDRAFT_13139 Bipolaris victoriae COCVIDRAFT_13139 I
CORT_0A07580 Candida orthopsilosis CORT_0A07580 I
CPC735_040200 Coccidioides posadasii CPC735_040200 I
CPUR_08669 Claviceps purpurea CPUR_08669 I
CSUB01_09867 Colletotrichum sublineola CSUB01_09867 I
CTHT_0003560 Chaetomium thermophilum CTHT_0003560 I
CTRG_03974 Candida tropicalis CTRG_03974 I
CY34DRAFT_54046 Suillus luteus CY34DRAFT_54046 I
DACRYDRAFT_48176 Dacryopinax sp DACRYDRAFT_48176 I
DAPPUDRAFT_300656 Daphnia pulex DAPPUDRAFT_300656 I
DEHA2F26488g Debaryomyces hansenii DEHA2F26488g I
DOTSEDRAFT_68866 Dothistroma septosporum DOTSEDRAFT_68866 I
DRE_04782 Drechslerella stenobrocha DRE_04782 I
Ecym_2589 Eremothecium cymbalariae Ecym_2589 I
ENSCING00000013482 Ciona intestinalis ENSCING00000013482 I
ENSCSAVG00000007408 Ciona savignyi ENSCSAVG00000007408 I
nfyal Danio rerio ENSDARG00000001621 I
ENSPMAG00000000964 Petromyzon marinus ENSPMAG00000000964 I
EPUS_00857 Endocarpon pusillum EPUS_00857 I
EURHEDRAFT_381770 Aspergillus ruber EURHEDRAFT_381770 I
EV44_g4880 Erysiphe necator EV44_g4880 I
F503_06796 Ophiostoma piceae uamh F503_06796 I
FFUJ_00859 Fusarium fujikuroi FFUJ_00859 I
FGRRES_00352 Fusarium graminearum FGRRES_00352 I
FIBRA_08626 Fibroporia radiculosa FIBRA_08626 I
FOMPIDRAFT_1123646 Fomitopsis pinicola FOMPIDRAFT_1123646 I
FOXG_00707 Fusarium oxysporum FOXG_00707 I
FPSE_00010 Fusarium pseudograminearum FPSE_00010 I
FVEG_00807 Fusarium verticillioides FVEG_00807 I
G210_4220 Candida maltosa G210_4220 I
G647_03321 Cladophialophora carrionii G647_03321 I
GALMADRAFT_123329 Galerina marginata GALMADRAFT_123329 I
GGTG_12878 Gaeumannomyces graminis GGTG_12878 I
GLOINDRAFT_349601 Rhizophagus irregularis GLOINDRAFT_349601 I
GLOTRDRAFT_21409 Gloeophyllum trabeum GLOTRDRAFT_21409 I
GLRG_01314 Colletotrichum graminicola GLRG_01314 I
GMDG_04517 Pseudogymnoascus destructans GMDG_04517 I
GNLVRS01_PISO0M07338g Millerozyma farinosa GNLVRS01_PISO0M07338g I
GNLVRS01_PISO0N07471g Millerozyma farinosa GNLVRS01_PISO0N07471g I
GSTUM_00001625001 Tuber melanosporum GSTUM_00001625001 I
H072_7706 Dactylellina haptotyla H072_7706 I
H101_06169 Trichophyton interdigitale H101_06169 I
H102_06780 Trichophyton rubrum H102_06780 I
H105_06820 Trichophyton soudanense H105_06820 I
HCBG_09045 Histoplasma capsulatum HCBG_09045 I
HETIRDRAFT_248206 Heterobasidion irregulare HETIRDRAFT_248206 I
HMPREF1120_07714 Exophiala dermatitidis HMPREF1120_07714 I
HMPREF1541_08131 Cyphellophora europaea HMPREF1541_08131 I
HMPREF1624_07645 Sporothrix schenckii HMPREF1624_07645 I
HPODL_04703 Ogataea parapolymorpha HPODL_04703 I
J056_003714 Wallemia ichthyophaga J056_003714 I
JAAARDRAFT_97747 Jaapia argillacea JAAARDRAFT_97747 I
JL09_g3820 Pichia kudriavzevii JL09_g3820 I
JL09_g5559 Pichia kudriavzevii JL09_g5559 I
K443DRAFT_676702 Laccaria amethystina K443DRAFT_676702 I
KAFR_0J02840 Kazachstania africana KAFR_0J02840 I
KLLA0_A00891g Kluyveromyces lactis KLLA0_A00891g I
KLTH0G00880g Lachancea thermotolerans KLTH0G00880g I
KNAG_0I00270 Kazachstania naganishii KNAG_0I00270 I
Kpol_507p12 Vanderwaltozyma polyspora Kpol_507p12 I
KUCA_T00003294001 Kuraishia capsulata KUCA_T00003294001 I
L804_00322 Cryptococcus gattii L804_00322 I
LALA0_S06e08218g Lachancea lanzarotensis LALA0_S06e08218g I
LELG_00868 Lodderomyces elongisporus LELG_00868 I
LEMA_P028420.1 Leptosphaeria maculans LEMA_P028420.1 I
M378DRAFT_52467 Amanita muscaria M378DRAFT_52467 I
M404DRAFT_68462 Pisolithus tinctorius M404DRAFT_68462 I
M407DRAFT_54328 Tulasnella calospora M407DRAFT_54328 I
M408DRAFT_66182 Serendipita vermifera M408DRAFT_66182 I
M413DRAFT_24434 Hebeloma cylindrosporum M413DRAFT_24434 I
M437DRAFT_74372 Aureobasidium melanogenum M437DRAFT_74372 I
M438DRAFT_358724 Aureobasidium pullulans M438DRAFT_358724 I
MAC_08141 Metarhizium acridum MAC_08141 I
MAJ_00916 Metarhizium majus MAJ_00916 I
maker-piw_contig_1928-snap-gene-0.5 Pythium iwayamai maker-piw_contig_1928-snap-gene-0.5 I
MAM_05750 Metarhizium album MAM_05750 I
MANI_001834 Metarhizium anisopliae MANI_001834 I
MAPG_00591 Magnaporthe poae MAPG_00591 I
MBM_02278 Marssonina brunnea MBM_02278 I
MBR_03191 Metarhizium brunneum MBR_03191 I
MCYG_07480 Arthroderma otae MCYG_07480 I
MGG_00354 Magnaporthe oryzae MGG_00354 I
MGU_03004 Metarhizium guizhouense MGU_03004 I
MGYG_05253 Microsporum gypseum MGYG_05253 I
Moror_8992 Moniliophthora roreri Moror_8992 I
MPH_13782 Macrophomina phaseolina MPH_13782 I
MSY001_2604 Malassezia sympodialis MSY001_2604 I
MVLG_01455 Microbotryum violaceum MVLG_01455 I
MYCFIDRAFT_209677 Pseudocercospora fijiensis MYCFIDRAFT_209677 I
Mycgr3G83804 Zymoseptoria tritici Mycgr3G83804 I
MYCTH_2297059 Myceliophthora thermophila MYCTH_2297059 I
NCAS_0E00300 Naumovozyma castellii NCAS_0E00300 I
NDAI_0I03200 Naumovozyma dairenensis NDAI_0I03200 I
NechaG98863 Fusarium solani NechaG98863 I
NEUTE1DRAFT_126747 Neurospora tetrasperma NEUTE1DRAFT_126747 I
OIDMADRAFT_64370 Oidiodendron maius OIDMADRAFT_64370 I
PAS_chr3_0766 Komagataella pastoris PAS_chr3_0766 I
PAXRUDRAFT_147875 Paxillus rubicundulus PAXRUDRAFT_147875 I
PCH_Pc12g01590 Penicillium rubens PCH_Pc12g01590 I
PDE_06383 Penicillium oxalicum PDE_06383 I
PDIP_02950 Penicillium digitatum PDIP_02950 I
PEX1_081380 Penicillium expansum PEX1_081380 I
PFICI_01568 Pestalotiopsis fici PFICI_01568 I
PFL1_05889 Pseudozyma flocculosa PFL1_05889 I
PHACADRAFT_54766 Phanerochaete carnosa PHACADRAFT_54766 I
Phatr3_J39335 Phaeodactylum tricornutum Phatr3_J39335 I
PHLGIDRAFT_43379 Phlebiopsis gigantea PHLGIDRAFT_43379 I
PICST_61386 Scheffersomyces stipitis PICST_61386 I
PIIN_00087 Piriformospora indica PIIN_00087 I
PILCRDRAFT_824094 Piloderma croceum PILCRDRAFT_824094 I
PISMIDRAFT_40699 Pisolithus microcarpus PISMIDRAFT_40699 I
PITC_020830 Penicillium italicum PITC_020830 I
PLEOSDRAFT_1027012 Pleurotus ostreatus PLEOSDRAFT_1027012 I
PMAA_100650 Talaromyces marneffei PMAA_100650 I
PODANS_1_17860 Podospora anserina PODANS_1_17860 I
POPTR_0016s05440 Populus trichocarpa POPTR_0016s05440 I
POSPLDRAFT_42451 Postia placenta POSPLDRAFT_42451 I
PTRG_08051 Pyrenophora triticirepentis PTRG_08051 I
PTT_11232 Pyrenophora teres PTT_11232 I
PV04_07209 Capronia semiimmersa PV04_07209 I
PV05_09594 Exophiala xenobiotica PV05_09594 I
PV06_05449 Exophiala oligosperma PV06_05449 I
PV07_10918 Cladophialophora immunda PV07_10918 I
PV08_01898 Exophiala spinifera PV08_01898 I
PV09_04933 Verruconis gallopava PV09_04933 I
PV10_06645 Exophiala mesophila PV10_06645 I
PV11_09254 Exophiala sideris PV11_09254 I
PVAR5_8453 Byssochlamys spectabilis PVAR5_8453 I
RHTO_00634 Rhodosporidium toruloides RHTO_00634 I
RTG_01693 Rhodotorula glutinis RTG_01693 I
S40285_00742 Stachybotrys chlorohalonata S40285_00742 I
S40288_04573 Stachybotrys chartarum S40288_04573 I
SBOR_3412 Sclerotinia borealis SBOR_3412 I
SCHCODRAFT_110229 Schizophyllum commune SCHCODRAFT_110229 I
SCLCIDRAFT_62922 Scleroderma citrinum SCLCIDRAFT_62922 I
SEPMUDRAFT_121871 Sphaerulina musiva SEPMUDRAFT_121871 I
SERLA73DRAFT_72938 Serpula lacrymans SERLA73DRAFT_72938 I
SETTUDRAFT_148331 Setosphaeria turcica SETTUDRAFT_148331 I
Si030663m.g Setaria italica Si030663m.g I
Si036728m.g Setaria italica Si036728m.g I
SJAG_00698 Schizosaccharomyces japonicus SJAG_00698 I
SKUD_123802 Saccharomyces kudriavzevii SKUD_123802 I
SMAC_00418 Sordaria macrospora SMAC_00418 I
Smp_030250 Schistosoma mansoni Smp_030250 I
SNOG_15220 Phaeosphaeria nodorum SNOG_15220 I
SOCG_03424 Schizosaccharomyces octosporus SOCG_03424 I
SPAPADRAFT_48205 Spathaspora passalidarum SPAPADRAFT_48205 I
php2 Schizosaccharomyces pombe SPBC725.11c I
SPBR_07722 Sporothrix brasiliensis SPBR_07722 I
SPOG_04316 Schizosaccharomyces cryophilus SPOG_04316 I
SPU_025589 Strongylocentrotus purpuratus SPU_025589 I
SPU_025737 Strongylocentrotus purpuratus SPU_025737 I
SS1G_01725 Sclerotinia sclerotiorum SS1G_01725 I
SU7_1051 Saccharomyces arboricola SU7_1051 I
TBLA_0E00260 Tetrapisispora blattae TBLA_0E00260 I
TDEL_0D06280 Torulaspora delbrueckii TDEL_0D06280 I
THITE_2112524 Thielavia terrestris THITE_2112524 I
TPHA_0A05980 Tetrapisispora phaffii TPHA_0A05980 I
TRIATDRAFT_259021 Trichoderma atroviride TRIATDRAFT_259021 I
TRIREDRAFT_124286 Trichoderma reesei TRIREDRAFT_124286 I
TRIVIDRAFT_175433 Trichoderma virens TRIVIDRAFT_175433 I
TRV_01971 Trichophyton verrucosum TRV_01971 I
TSTA_057980 Talaromyces stipitatus TSTA_057980 I
TSTA_108980 Talaromyces stipitatus TSTA_108980 I
U727_00431281391 Penicillium solitum U727_00431281391 I
UCRNP2_3187 Neofusicoccum parvum UCRNP2_3187 I
UCRPA7_4038 Togninia minima UCRPA7_4038 I
UREG_01379 Uncinocarpus reesii UREG_01379 I
UV8b_4419 Ustilaginoidea virens UV8b_4419 I
V499_07378 Pseudogymnoascus pannorum V499_07378 I
V565_064680 Rhizoctonia solani V565_064680 I
VDBG_05896 Verticillium alfalfae VDBG_05896 I
VHEMI02644 Torrubiella hemipterigena VHEMI02644 I
W97_01249 Coniosporium apollinis W97_01249 I
WALSEDRAFT_57633 Wallemia sebi WALSEDRAFT_57633 I
X797_004191 Metarhizium robertsii X797_004191 I
YALI0_F23111g Yarrowia lipolytica YALI0_F23111g I
Z517_09964 Fonsecaea pedrosoi Z517_09964 I
Z518_09077 Rhinocladiella mackenziei Z518_09077 I
ZBAI_03607 Zygosaccharomyces bailii ZBAI_03607 I
ZBAI_09292 Zygosaccharomyces bailii ZBAI_09292 I
ZYRO0E09372g Zygosaccharomyces rouxii ZYRO0E09372g I
e_gww1.6.1.1022.1 Pichia stipitis e_gww1.6.1.1022.1 I
estExt_fgenesh1_pg.C_10706 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10706 I
estExt_fgenesh1_pg.C_120063 Sporobolomyces roseus estExt_fgenesh1_pg.C_120063 I
estExt_fgenesh1_pg.C_sca_1_chr1_3_00639 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00639 I
estExt_fgenesh1_pm.C_30047 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30047 I
estExt_fgenesh2_kg.C_30031 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_30031 I
estExt_fgenesh2_pm.C_150034 Fragilariopsis cylindrus estExt_fgenesh2_pm.C_150034 I
estExt_fgenesh3_kg.C_40179 Neurospora discreta estExt_fgenesh3_kg.C_40179 I
estExt_fgeneshPB_pg.C_250119 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_250119 I
fgenesh1_pm.C_chr_1000514 Mycosphaerella graminicola fgenesh1_pm.C_chr_1000514 I
fgeneshMC_pg.10_#_374 Mucor circinelloides fgeneshMC_pg.10_#_374 I
fgeneshMC_pg.11_#_166 Mucor circinelloides fgeneshMC_pg.11_#_166 I
fgeneshPB_pg.4__282 Phycomyces blakesleeanus fgeneshPB_pg.4__282 I
gwh2.6.574.1 Phanerochaete chrysosporium gwh2.6.574.1 I
Ocbimv22027261m.g Octopus bimaculoides Ocbimv22027261m.g I
Sakowv30001860m.g Saccoglossus kowalevskii Sakowv30001860m.g I
MDP0000183865 Malus domestica MDP0000183865 I
Pavir.Ba00442 Panicum virgatum Pavir.Ba00442 I
Pavir.Ib01915 Panicum virgatum Pavir.Ib01915 I
Pavir.J05826 Panicum virgatum Pavir.J05826 I
NCU03033 Neurospora crassa NCU03033 I
Scas_Contig712.15 Saccharomyces castellii Scas_Contig712.15 I
Sjc_0096630 Schistosoma japonicum Sjc_0096630 I
SMU15024997 Schmidtea mediterranea SMU15024997 I
SMU15029949 Schmidtea mediterranea SMU15029949 I
SNAPOd2T00008768001 Oikopleura dioica SNAPOd2T00008768001 I
6941_YGL237C Saccharomyces mikatae 6941_YGL237C I
7676_YGL237C Saccharomyces paradoxus 7676_YGL237C I
7831_YGL237C Saccharomyces bayanus 7831_YGL237C I
AB03151.1 Alternaria brassicicola AB03151.1 I
EDP44549.1 Malassezia globosa EDP44549.1 I
estExt_Genewise1Plus.C_140165 Cryphonectria parasitica estExt_Genewise1Plus.C_140165 I
fgenesh1_pg.00815_#_160 Aspergillus carbonarius fgenesh1_pg.00815_#_160 I
fgeneshTM_pg.1_#_1734 Tremella mesenterica fgeneshTM_pg.1_#_1734 I
KLTH0G00880g Kluyveromyces thermotolerans KLTH0G00880g I
Kwal_19244 Kluyveromyces waltii Kwal_19244 I
Pc12g01590 Penicillium chrysogenum Pc12g01590 I
PMAA_100650 Penicillium marneffei PMAA_100650 I
SAKL0F00990g Lachancea kluyveri SAKL0F00990g I
XP_002492996.1 Pichia pastoris XP_002492996.1 I
A_04341 Schistosoma haematobium A_04341 I
csin107256 Clonorchis sinensis csin107256 I
D915_02266 Fasciola hepatica D915_02266 I
SCUD_0001212601 Schistosoma curassoni SCUD_0001212601 I
SMRZ_0000504601 Schistosoma margrebowiei SMRZ_0000504601 I
SMTD_0000774701 Schistosoma mattheei SMTD_0000774701 I
SROB_0000925201 Schistosoma rodhaini SROB_0000925201 I
T265_04195 Opisthorchis viverrini T265_04195 I
TRE_0001025401 Trichobilharzia regenti TRE_0001025401 I
DI09_24p280 Microsporidia sp DI09_24p280 N
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N
OB03G35340 Oryza brachyantha OB03G35340 N
PaG_02568 Pseudozyma aphidis PaG_02568 N
PHSY_003968 Pseudozyma hubeiensis PHSY_003968 N
PV07_09071 Cladophialophora immunda PV07_09071 N
UHOR_02364 Ustilago hordei UHOR_02364 N
EuGene.0000150165 Micromonas pusilla EuGene.0000150165 N
estExt_fgenesh2_pg.C_Chr_130205 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_130205 N